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BioLiP
Download all results in tab-seperated text for 87 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1g58:A (1.55) BS01 AU 4.1.99.12 GO:0000287 ... P0A7J0 11342130
    2 2aaq:A (2.6) BS03 AU 1.8.1.7 GO:0004362 ... P00390 16493712
    3 2yau:A (3.5) BS03 AU 1.8.1.12 GO:0000166 ... A4HSF7 21833767
    4 2yau:B (3.5) BS04 AU 1.8.1.12 GO:0000166 ... A4HSF7 21833767
    5 3es3:A (2.795) BS01 AU 1.16.3.1 GO:0004322 ... P02794 18991401
    6 3es3:A (2.795) BS02 AU 1.16.3.1 GO:0004322 ... P02794 18991401
    7 3h4k:A (2.55) BS02 AU 1.8.1.9 GO:0000166 ... Q962Y6 19710012
    8 3h4k:A (2.55) BS03 AU 1.8.1.9 GO:0000166 ... Q962Y6 19710012
    9 4a65:A (1.7) BS02 AU 1.8.1.9 GO:0000166 ... C4LW95 26876147
    10 4a65:B (1.7) BS02 AU 1.8.1.9 GO:0000166 ... C4LW95 26876147
    11 4lgk:A (1.96) BS01 AU 3.2.1.17 GO:0003796 ... P00698 24045294
    12 4qy9:A (2.05) BS01 AU 3.2.1.17 GO:0003796 ... P00698 25340580
    13 4y2i:A (2.0) BS01 AU ? GO:0046872 ... A0A140UHB4 26636614
    14 4zfp:A (1.96) BS01 AU 3.2.1.17 GO:0003796 ... P00698 26054833
    15 5gu0:X (1.95) BS01 AU ? GO:0005506 ... P02791 28300064
    16 5gu0:X (1.95) BS02 AU ? GO:0005506 ... P02791 28300064
    17 5gu0:X (1.95) BS03 AU ? GO:0005506 ... P02791 28300064
    18 5gu0:X (1.95) BS04 AU ? GO:0005506 ... P02791 28300064
    19 5gu0:X (1.95) BS05 AU ? GO:0005506 ... P02791 28300064
    20 5gu1:X (2.05) BS01 AU ? GO:0005506 ... P02791 28300064
    21 5gu1:X (2.05) BS02 AU ? GO:0005506 ... P02791 28300064
    22 5gu1:X (2.05) BS03 AU ? GO:0005506 ... P02791 28300064
    23 5gu1:X (2.05) BS04 AU ? GO:0005506 ... P02791 28300064
    24 5gu1:X (2.05) BS05 AU ? GO:0005506 ... P02791 28300064
    25 5gu2:X (2.12) BS01 AU ? GO:0005506 ... P02791 28300064
    26 5gu2:X (2.12) BS02 AU ? GO:0005506 ... P02791 28300064
    27 5gu2:X (2.12) BS03 AU ? GO:0005506 ... P02791 28300064
    28 5gu2:X (2.12) BS04 AU ? GO:0005506 ... P02791 28300064
    29 5gu3:X (2.03) BS01 AU ? GO:0005506 ... P02791 28300064
    30 5ix6:A (1.85) BS01 AU ? GO:0005506 ... P02791 27326513
    31 5ix6:A (1.85) BS02 AU ? GO:0005506 ... P02791 27326513
    32 5ix6:A (1.85) BS03 AU ? GO:0005506 ... P02791 27326513
    33 5ix6:A (1.85) BS04 AU ? GO:0005506 ... P02791 27326513
    34 5w1l:A (2.88) BS02 AU 1.8.1.9 GO:0000166 ... Q869D7 28463568
    35 5w1l:B (2.88) BS02 AU 1.8.1.9 GO:0000166 ... Q869D7 28463568
    36 5z8s:A (1.973) BS01 AU 1.16.3.1 GO:0006826 ... Q8N4E7 31277668
    37 5z91:A (3.004) BS01 AU 1.16.3.1 GO:0006826 ... Q8N4E7 31277668
    38 6env:A (1.82) BS01 AU ? GO:0005506 ... P02791 29072740
    39 6env:A (1.82) BS02 AU ? GO:0005506 ... P02791 29072740
    40 6enw:A (2.6) BS01 AU ? GO:0005506 ... P02791 29072740
    41 6fx8:A (1.8) BS01 AU ? GO:0005506 ... P02791 29709536
    42 6fx9:A (1.5) BS01 AU ? GO:0005506 ... P02791 29709536
    43 6i9y:C (2.14) BS03 AU 3.5.1.5 GO:0005737 ... P41020 30996797
    44 6seu:A (1.95) BS01 AU 3.2.1.17 GO:0003796 ... P00698 31490509
    45 6seu:A (1.95) BS02 AU 3.2.1.17 GO:0003796 ... P00698 31490509
    46 6sew:A (2.12) BS01 AU 3.2.1.17 GO:0003796 ... P00698 31490509
    47 6sex:A (1.78) BS01 AU 3.2.1.17 GO:0003796 ... P00698 31490509
    48 6sex:A (1.78) BS02 AU 3.2.1.17 GO:0003796 ... P00698 31490509
    49 6sez:A (2.22) BS01 AU 3.2.1.17 GO:0003796 ... P00698 31490509
    50 6sez:A (2.22) BS02 AU 3.2.1.17 GO:0003796 ... P00698 31490509
    51 7p7n:CCC (1.8) BS03 AU 3.5.1.5 GO:0005737 ... P41020 34585201
    52 7vip:A (1.9) BS01 AU ? GO:0005506 ... P02791 36697940
    53 7viq:A (1.9) BS01 AU ? GO:0005506 ... P02791 36697940
    54 7viq:A (1.9) BS02 AU ? GO:0005506 ... P02791 36697940
    55 7viq:A (1.9) BS03 AU ? GO:0005506 ... P02791 36697940
    56 7viq:A (1.9) BS04 AU ? GO:0005506 ... P02791 36697940
    57 7vir:A (1.9) BS01 AU ? GO:0005506 ... P02791 36697940
    58 7vir:A (1.9) BS02 AU ? GO:0005506 ... P02791 36697940
    59 7vir:A (1.9) BS03 AU ? GO:0005506 ... P02791 36697940
    60 7vir:A (1.9) BS04 AU ? GO:0005506 ... P02791 36697940
    61 7vis:A (1.85) BS01 AU ? GO:0005506 ... P02791 36697940
    62 7vis:A (1.85) BS02 AU ? GO:0005506 ... P02791 36697940
    63 7vis:A (1.85) BS03 AU ? GO:0005506 ... P02791 36697940
    64 7vis:A (1.85) BS04 AU ? GO:0005506 ... P02791 36697940
    65 7vit:A (1.9) BS01 AU ? GO:0005506 ... P02791 36697940
    66 7vit:A (1.9) BS02 AU ? GO:0005506 ... P02791 36697940
    67 7vit:A (1.9) BS03 AU ? GO:0005506 ... P02791 36697940
    68 7vit:A (1.9) BS04 AU ? GO:0005506 ... P02791 36697940
    69 7vit:A (1.9) BS05 AU ? GO:0005506 ... P02791 36697940
    70 7viu:A (1.5) BS01 AU ? GO:0005506 ... P02791 36697940
    71 7viu:A (1.5) BS02 AU ? GO:0005506 ... P02791 36697940
    72 7viu:A (1.5) BS03 AU ? GO:0005506 ... P02791 36697940
    73 7yjp:A (1.88) BS01 AU 2.7.-.- GO:0016772 ... A0A0R6L508 36662362
    74 7yjp:B (1.88) BS01 AU 2.7.-.- GO:0016772 ... A0A0R6L508 36662362
    75 7yjq:A (1.6) BS01 AU 2.7.-.- GO:0016772 ... A0A0R6L508 36662362
    76 7yjq:B (1.6) BS01 AU 2.7.-.- GO:0016772 ... A0A0R6L508 36662362
    77 7yjr:A (2.3) BS01 AU 2.7.-.- GO:0016772 ... A0A0R6L508 36662362
    78 7yjr:B (2.3) BS01 AU 2.7.-.- GO:0016772 ... A0A0R6L508 36662362
    79 7yjs:A (2.5) BS01 AU 2.7.-.- GO:0016772 ... A0A0R6L508 36662362
    80 7yjs:B (2.5) BS01 AU 2.7.-.- GO:0016772 ... A0A0R6L508 36662362
    81 7yjt:A (2.1) BS01 AU 2.7.-.- GO:0016772 ... A0A0R6L508 36662362
    82 7yjt:B (2.1) BS01 AU 2.7.-.- GO:0016772 ... A0A0R6L508 36662362
    83 8b0s:A (2.42) BS01 AU 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 36421689
    84 8b0t:A (2.4) BS01 AU 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 36421689
    85 8b0t:A (2.4) BS02 AU 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 36421689
    86 8b7l:AAA (1.24) BS01 AU ? GO:0005506 ... P02791 36430642
    87 8b7o:AAA (1.17) BS03 AU 1.16.3.1 GO:0004322 ... P02794 36430642
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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