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BioLiP
Download all results in tab-seperated text for 31 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1afl:A (1.7) BS01 ATR 4.6.1.18 GO:0003676 ... P61823 9154942 MOAD: Ki=520nM
    PDBbind: -logKd/Ki=6.28, Ki=520nM
    2 1afl:B (1.7) BS01 ATR 4.6.1.18 GO:0003676 ... P61823 9154942 MOAD: Ki=520nM
    3 1p77:A (1.95) BS01 ATR 1.1.1.25 GO:0004764 ... P43876 12837789
    4 1ra8:A (1.8) BS01 ATR 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    5 2hk9:A (2.2) BS01 ATR 1.1.1.25 GO:0004764 ... O67049 17649975
    6 2iz0:B (2.6) BS02 ATR 1.1.1.44 GO:0004616 ... P96789 17222187
    7 2iz0:C (2.6) BS01 ATR 1.1.1.44 GO:0004616 ... P96789 17222187
    8 2iz1:A (2.3) BS01 ATR 1.1.1.44 GO:0004616 ... P96789 17222187
    9 2iz1:B (2.3) BS02 ATR 1.1.1.44 GO:0004616 ... P96789 17222187
    10 2iz1:C (2.3) BS01 ATR 1.1.1.44 GO:0004616 ... P96789 17222187
    11 3fwn:B (1.5) BS02 ATR 1.1.1.44 GO:0004616 ... P00350 19686854
    12 3v0s:A (1.773) BS01 ATR 1.1.1.317 GO:0004033 ... Q3L181 22334702
    13 3v0t:A (2.333) BS01 ATR 1.1.1.317 GO:0004033 ... Q3L181 22334702
    14 4klx:A (1.23) BS01 ATR 1.5.1.3 GO:0004146 ... P9WNX1 24210757
    15 4klx:B (1.23) BS01 ATR 1.5.1.3 GO:0004146 ... P9WNX1 24210757
    16 4km0:A (1.3) BS02 ATR 1.5.1.3 GO:0004146 ... P9WNX1 24210757
    17 4km0:B (1.3) BS02 ATR 1.5.1.3 GO:0004146 ... P9WNX1 24210757
    18 4km2:A (1.4) BS01 ATR 1.5.1.3 GO:0004146 ... P9WNX1 24210757
    19 4km2:B (1.4) BS01 ATR 1.5.1.3 GO:0004146 ... P9WNX1 24210757
    20 4kne:A (2.0) BS02 ATR 1.5.1.3 GO:0004146 ... P9WNX1 24210757
    21 4kne:B (2.0) BS02 ATR 1.5.1.3 GO:0004146 ... P9WNX1 24210757
    22 6c75:B (2.4) BS01 ATR ? GO:0000166 ... A0A0Q2QQL1 30950821
    23 6c7l:A (1.91) BS01 ATR ? GO:0000166 ... A0A0Q2QQL1 30950821
    24 7put:A (2.8) BS02 ATR 1.8.1.9 GO:0004791 ... A0A1I9G0T9 35276442
    25 7pvj:A (3.1) BS02 ATR 1.8.1.9 GO:0004791 ... A0A1I9G0T9 35276442
    26 7qei:A (2.1) BS02 ATR 1.5.1.15
    1.5.1.5
    3.5.4.9    		 GO:0003824 ... Q9H903 35712863
    27 7s6c:C (3.1) BS01 ATR 2.3.1.94 GO:0004312 ... B6ZK67
    Q03132    		 34735234
    28 7s6d:C (3.1) BS01 ATR 2.3.1.94 GO:0004312 ... B6ZK67
    Q03132    		 34735234
    29 7z0w:B (2.06) BS03 ATR 1.-.-.- GO:0003955 ... P17117 35648111
    30 7z0w:D (2.06) BS03 ATR 1.-.-.- GO:0003955 ... P17117 35648111
    31 8hap:B (2.2) BS01 ATR 1.2.1.79 GO:0008911 ... Q976X5 37227376
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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