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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2c4h:A (2.15) BS01 AT3 3.1.1.7 GO:0001507 ... P04058 16763558
    2 2c4h:A (2.15) BS02 AT3 3.1.1.7 GO:0001507 ... P04058 16763558
    3 2c58:A (2.3) BS02 AT3 3.1.1.7 GO:0001507 ... P04058 16763558
    4 2ha5:A (2.15) BS01 AT3 3.1.1.7 GO:0001919 ... P21836 16837465 PDBbind: -logKd/Ki=4.34, Kd=46uM
    5 2ha5:A (2.15) BS03 AT3 3.1.1.7 GO:0001919 ... P21836 16837465 PDBbind: -logKd/Ki=4.34, Kd=46uM
    6 2ha5:B (2.15) BS01 AT3 3.1.1.7 GO:0001919 ... P21836 16837465
    7 2ha5:B (2.15) BS03 AT3 3.1.1.7 GO:0001919 ... P21836 16837465
    8 6uqy:A (1.57) BS01 AT3 3.1.-.- GO:0004104 ... Q9HUP2 32371400
    9 6uqy:B (1.57) BS01 AT3 3.1.-.- GO:0004104 ... Q9HUP2 32371400
    10 6ur1:A (1.42) BS02 AT3 ? GO:0004104 ... Q9HUP2 32371400
    11 6ur1:B (1.42) BS02 AT3 ? GO:0004104 ... Q9HUP2 32371400
    12 8d8y:A (1.54) BS01 AT3 ? GO:0004104 ... Q9HUP2 N/A
    13 8d8y:B (1.54) BS01 AT3 ? GO:0004104 ... Q9HUP2 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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