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BioLiP
Download all results in tab-seperated text for 449 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 7ffp:A (1.8) BS01 ASP 3.4.13.21 GO:0005737 ... Q91642 34431561
    402 7m11:A (1.83) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 N/A
    403 7m11:B (1.83) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 N/A
    404 7m11:C (1.83) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 N/A
    405 7m11:D (1.83) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 N/A
    406 7n2r:F (2.28) BS02 ASP N/A N/A N/A 36477533
    407 7ngh:A (3.5) BS01 ASP ? GO:0015293 ... Q5JID0 34140623
    408 7ngh:B (3.5) BS01 ASP ? GO:0015293 ... Q5JID0 34140623
    409 7ngh:C (3.5) BS01 ASP ? GO:0015293 ... Q5JID0 34140623
    410 7rcp:A (2.2) BS01 ASP ? GO:0005283 ... O59010 35452090
    411 7rcp:B (2.2) BS01 ASP ? GO:0005283 ... O59010 35452090
    412 7rcp:C (2.2) BS01 ASP ? GO:0005283 ... O59010 35452090
    413 7u6m:A (1.75) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 35979719
    414 7u6m:B (1.75) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 35979719
    415 7u6m:C (1.75) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 35979719
    416 7u6m:D (1.75) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 35979719
    417 7ugd:A (2.95) BS01 ASP ? GO:0005283 ... O59010 N/A
    418 7ugv:A (2.94) BS01 ASP ? GO:0005283 ... O59010 37023263
    419 7ugx:A (2.96) BS01 ASP ? GO:0005283 ... O59010 37023263
    420 7uh3:A (2.99) BS01 ASP ? GO:0005283 ... O59010 N/A
    421 7uh6:A (3.44) BS01 ASP ? GO:0005283 ... O59010 N/A
    422 7uio:Bc (3.3) BS03 ASP ? GO:0000122 ... P40356 36731470
    423 7wae:D (2.64) BS07 ASP 6.3.2.29
    6.3.2.30    		 GO:0004326 ... Q113V7 36042318
    424 8afa:A (3.25) BS01 ASP ? GO:0015293 ... Q5JID0 37002226
    425 8afa:B (3.25) BS01 ASP ? GO:0015293 ... Q5JID0 37002226
    426 8afa:C (3.25) BS01 ASP ? GO:0015293 ... Q5JID0 37002226
    427 8cp2:A (2.1) BS03 ASP ? GO:0000166 ... A0A2V1NMV1 37302552
    428 8cp2:A (2.1) BS04 ASP ? GO:0000166 ... A0A2V1NMV1 37302552
    429 8cp2:B (2.1) BS03 ASP ? GO:0000166 ... A0A2V1NMV1 37302552
    430 8ecd:A (1.62) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 36310372
    431 8ecd:B (1.62) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 36310372
    432 8ecd:C (1.62) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 36310372
    433 8ecd:D (1.62) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 36310372
    434 8hrh:A (2.07) BS01 ASP N/A N/A N/A 37547453
    435 8ovo:A (1.7) BS01 ASP ? GO:0006091 ... P37902
    P42212    		 N/A
    436 8ovo:B (1.7) BS01 ASP ? GO:0006091 ... P37902
    P42212    		 N/A
    437 8ovp:A (1.7) BS01 ASP ? GO:0006091 ... P37902
    P42212    		 N/A
    438 8ovp:B (1.7) BS01 ASP ? GO:0006091 ... P37902
    P42212    		 N/A
    439 8paw:A (2.14) BS01 ASP N/A N/A Q13043 N/A
    440 8u3g:A (3.42) BS01 ASP ? GO:0005351 ... Q9NRA2 N/A
    441 8uou:A (1.35) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    442 8uou:B (1.35) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    443 8up3:E (1.76) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    444 8up3:F (1.76) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    445 8up6:B (1.7) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    446 8up6:C (1.7) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    447 8up8:A (1.9) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    448 8up8:B (1.9) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    449 8up8:C (1.9) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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