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BioLiP
Download all results in tab-seperated text for 449 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 5e9s:B (2.8) BS01 ASP ? GO:0015293 ... Q5JID0 27830699
    202 5e9s:C (2.8) BS01 ASP ? GO:0015293 ... Q5JID0 27830699
    203 5f52:A (1.63) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 26855287
    204 5f52:B (1.63) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 26855287
    205 5f52:C (1.63) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 26855287
    206 5f52:D (1.63) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 26855287
    207 5fdn:A (2.2) BS01 ASP 4.1.1.31 GO:0003824 ... Q84VW9 N/A
    208 5fdn:B (2.2) BS01 ASP 4.1.1.31 GO:0003824 ... Q84VW9 N/A
    209 5hrc:A (1.765) BS01 ASP N/A GO:0016855 ... N/A 27001440
    210 5hrc:B (1.765) BS01 ASP N/A GO:0016855 ... N/A 27001440
    211 5i3z:A (2.05) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 27354283
    212 5i3z:B (2.05) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 27354283
    213 5i3z:C (2.05) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 27354283
    214 5i3z:D (2.05) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 27354283
    215 5i48:A (1.5) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 27354283
    216 5i48:B (1.5) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 27354283
    217 5i48:C (1.5) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 27354283
    218 5i48:D (1.5) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 27354283
    219 5i4b:A (1.6) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 27354283
    220 5i4b:B (1.6) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 27354283
    221 5i4b:C (1.6) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 27354283
    222 5jwg:A (2.2) BS02 ASP 3.4.14.- GO:0004177 ... F8WQK8 28588213
    223 5jwg:B (2.2) BS02 ASP 3.4.14.- GO:0004177 ... F8WQK8 28588213
    224 5jxf:A (2.1) BS02 ASP 3.4.14.- GO:0004177 ... A6GWM2 28588213
    225 5jxf:B (2.1) BS02 ASP 3.4.14.- GO:0004177 ... A6GWM2 28588213
    226 5k3o:A (1.696) BS01 ASP 3.5.1.1 GO:0004067 ... P50286 28139703
    227 5k3o:B (1.696) BS01 ASP 3.5.1.1 GO:0004067 ... P50286 28139703
    228 5k3o:C (1.696) BS01 ASP 3.5.1.1 GO:0004067 ... P50286 28139703
    229 5k3o:D (1.696) BS01 ASP 3.5.1.1 GO:0004067 ... P50286 28139703
    230 5k4g:A (1.6) BS01 ASP 3.5.1.1 GO:0004067 ... P50286 28139703
    231 5k4g:B (1.6) BS01 ASP 3.5.1.1 GO:0004067 ... P50286 28139703
    232 5k4g:C (1.6) BS01 ASP 3.5.1.1 GO:0004067 ... P50286 28139703
    233 5k4g:D (1.6) BS01 ASP 3.5.1.1 GO:0004067 ... P50286 28139703
    234 5kxj:A (1.87) BS01 ASP 1.4.3.16 GO:0000166 ... Q8ZMX9 N/A
    235 5llm:A (3.25) BS01 ASP ? GO:0015293 ... P43003
    Q15758    		 28424515
    236 5llu:A (3.32) BS01 ASP ? GO:0015293 ... P43003
    Q15758    		 28424515
    237 5lm4:A (3.1) BS01 ASP ? GO:0015293 ... P43003
    Q15758    		 28424515
    238 5mq5:A (1.6) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 29101342
    239 5mq5:B (1.6) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 29101342
    240 5mq5:C (1.6) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 29101342
    241 5mq5:D (1.6) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 29101342
    242 5oxm:A (2.295) BS19 ASP ? GO:0005886 ... Q5M4H8 29429879 PDBbind: -logKd/Ki=1.30, Kd>50mM
    243 5w25:A (2.65) BS01 ASP 6.1.1.23 GO:0000166 ... P9WFW3 N/A
    244 5w25:B (2.65) BS01 ASP 6.1.1.23 GO:0000166 ... P9WFW3 N/A
    245 5wxy:A (2.63) BS01 ASP ? GO:0016853 ... Q9RNB4 31101340
    246 5zie:A (2.0) BS01 ASP 3.4.11.2 GO:0004177 ... Q5ZVE3 30172821
    247 5zie:B (2.0) BS01 ASP 3.4.11.2 GO:0004177 ... Q5ZVE3 30172821
    248 6a4r:A (1.828) BS01 ASP 3.4.13.21 GO:0005737 ... P36936 30194851
    249 6a4r:B (1.828) BS01 ASP 3.4.13.21 GO:0005737 ... P36936 30194851
    250 6b5z:A (2.3) BS02 ASP 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    251 6b5z:A (2.3) BS03 ASP 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    252 6b5z:B (2.3) BS02 ASP 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    253 6b5z:B (2.3) BS03 ASP 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    254 6b5z:B (2.3) BS04 ASP 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    255 6b61:A (2.7) BS02 ASP 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    256 6b61:A (2.7) BS03 ASP 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    257 6b61:A (2.7) BS04 ASP 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    258 6b61:A (2.7) BS05 ASP 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    259 6b61:B (2.7) BS01 ASP 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    260 6b61:B (2.7) BS03 ASP 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    261 6b61:B (2.7) BS04 ASP 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    262 6b61:B (2.7) BS05 ASP 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    263 6b61:B (2.7) BS06 ASP 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    264 6b61:B (2.7) BS07 ASP 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    265 6b64:A (2.6) BS01 ASP 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    266 6b64:A (2.6) BS05 ASP 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    267 6b64:A (2.6) BS06 ASP 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    268 6b64:B (2.6) BS01 ASP 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    269 6b64:B (2.6) BS02 ASP 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    270 6b64:B (2.6) BS03 ASP 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    271 6b64:B (2.6) BS04 ASP 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    272 6bat:A (3.4) BS01 ASP ? GO:0005283 ... O59010 29295993
    273 6bat:B (3.4) BS01 ASP ? GO:0005283 ... O59010 29295993
    274 6bat:C (3.4) BS01 ASP ? GO:0005283 ... O59010 29295993
    275 6bv1:A (2.0) BS01 ASP 3.4.11.2 GO:0001525 ... P15145 28465619
    276 6ctf:A (4.05) BS01 ASP ? GO:0005283 ... O59010 30255846
    277 6ctf:B (4.05) BS01 ASP ? GO:0005283 ... O59010 30255846
    278 6ctf:C (4.05) BS01 ASP ? GO:0005283 ... O59010 30255846
    279 6h1u:A (1.68) BS01 ASP ? GO:0005576 ... P96257 30065086 MOAD: Kd=4.8uM
    PDBbind: -logKd/Ki=5.32, Kd=4.8uM
    280 6jks:A (2.1) BS02 ASP 2.1.3.2 GO:0004070 ... Q4D3W3 N/A
    281 6jks:B (2.1) BS02 ASP 2.1.3.2 GO:0004070 ... Q4D3W3 N/A
    282 6jks:C (2.1) BS02 ASP 2.1.3.2 GO:0004070 ... Q4D3W3 N/A
    283 6jks:D (2.1) BS02 ASP 2.1.3.2 GO:0004070 ... Q4D3W3 N/A
    284 6jks:E (2.1) BS02 ASP 2.1.3.2 GO:0004070 ... Q4D3W3 N/A
    285 6jks:F (2.1) BS02 ASP 2.1.3.2 GO:0004070 ... Q4D3W3 N/A
    286 6jl4:B (2.4) BS01 ASP 2.1.3.2 GO:0004070 ... O15636 N/A
    287 6jl4:C (2.4) BS01 ASP 2.1.3.2 GO:0004070 ... O15636 N/A
    288 6jl4:D (2.4) BS01 ASP 2.1.3.2 GO:0004070 ... O15636 N/A
    289 6jl4:E (2.4) BS01 ASP 2.1.3.2 GO:0004070 ... O15636 N/A
    290 6jl4:F (2.4) BS01 ASP 2.1.3.2 GO:0004070 ... O15636 N/A
    291 6jl5:A (2.05) BS01 ASP 2.1.3.2 GO:0004070 ... O15636 N/A
    292 6jl5:B (2.05) BS01 ASP 2.1.3.2 GO:0004070 ... O15636 N/A
    293 6jl5:C (2.05) BS01 ASP 2.1.3.2 GO:0004070 ... O15636 N/A
    294 6jl5:D (2.05) BS01 ASP 2.1.3.2 GO:0004070 ... O15636 N/A
    295 6jl5:E (2.05) BS01 ASP 2.1.3.2 GO:0004070 ... O15636 N/A
    296 6jl5:F (2.05) BS01 ASP 2.1.3.2 GO:0004070 ... O15636 N/A
    297 6jl6:C (2.0) BS01 ASP 2.1.3.2 GO:0004070 ... O15636 N/A
    298 6pa2:A (1.9) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 31423681
    299 6pa2:B (1.9) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 31423681
    300 6pa2:C (1.9) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 31423681
    301 6pa2:D (1.9) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 31423681
    302 6pa4:A (1.85) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 31423681
    303 6pa4:B (1.85) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 31423681
    304 6pa4:C (1.85) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 31423681
    305 6pa4:D (1.85) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 31423681
    306 6paa:A (1.85) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 31423681
    307 6paa:B (1.85) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 31423681
    308 6paa:C (1.85) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 31423681
    309 6paa:D (1.85) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 31423681
    310 6pab:A (1.73) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 31423681
    311 6pab:B (1.73) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 31423681
    312 6pab:C (1.73) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 31423681
    313 6pab:C (1.73) BS02 ASP 3.5.1.1 GO:0004067 ... P00805 31423681
    314 6pab:D (1.73) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 31423681
    315 6pac:A (1.6) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 31423681
    316 6pac:B (1.6) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 31423681
    317 6pac:C (1.6) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 31423681
    318 6pac:D (1.6) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 31423681
    319 6pae:A (1.6) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 31423681
    320 6pae:B (1.6) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 31423681
    321 6pae:C (1.6) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 31423681
    322 6pae:D (1.6) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 31423681
    323 6pq8:A (2.2) BS01 ASP 3.5.2.6 GO:0008800 ... Q9X6W1 31780261
    324 6qf3:A (1.521) BS06 ASP 3.4.24.27 GO:0004222 ... P00800 31316815
    325 6qf3:A (1.521) BS07 ASP 3.4.24.27 GO:0004222 ... P00800 31316815
    326 6rue:A (1.65) BS01 ASP 3.5.1.1 GO:0004067 ... P50286 N/A
    327 6rue:B (1.65) BS01 ASP 3.5.1.1 GO:0004067 ... P50286 N/A
    328 6rue:C (1.65) BS01 ASP 3.5.1.1 GO:0004067 ... P50286 N/A
    329 6rue:D (1.65) BS01 ASP 3.5.1.1 GO:0004067 ... P50286 N/A
    330 6tnh:A (2.21) BS03 ASP 6.3.4.25 GO:0000166 ... G3FFN6 33926955
    331 6uog:A (2.29) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 33607531
    332 6uog:B (2.29) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 33607531
    333 6uog:C (2.29) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 33607531
    334 6uog:D (2.29) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 33607531
    335 6uog:E (2.29) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 33607531
    336 6uog:F (2.29) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 33607531
    337 6uog:G (2.29) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 33607531
    338 6uog:H (2.29) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 33607531
    339 6uoh:A (2.1) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 33607531
    340 6uoh:B (2.1) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 33607531
    341 6uwf:A (3.08) BS01 ASP ? GO:0005283 ... O59010 32514183
    342 6uwl:A (3.62) BS01 ASP ? GO:0005283 ... O59010 32514183
    343 6v24:A (1.9) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 32364696
    344 6v24:D (1.9) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 32364696
    345 6v25:A (1.78) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 32364696
    346 6v25:B (1.78) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 32364696
    347 6v26:A (1.8) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 32364696
    348 6v26:B (1.8) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 32364696
    349 6v26:C (1.8) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 32364696
    350 6v26:D (1.8) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 32364696
    351 6v29:A (2.0) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 32364696
    352 6v29:B (2.0) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 32364696
    353 6v29:C (2.0) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 32364696
    354 6v29:D (2.0) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 32364696
    355 6v5f:A (2.1) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 N/A
    356 6v5f:D (2.1) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 N/A
    357 6v75:B (2.85) BS02 ASP 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 32144209
    358 6v75:C (2.85) BS04 ASP 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 32144209
    359 6v8g:A (3.38) BS01 ASP ? GO:0005283 ... O59010 33185289
    360 6v8g:B (3.38) BS01 ASP ? GO:0005283 ... O59010 33185289
    361 6v8g:C (3.38) BS01 ASP ? GO:0005283 ... O59010 33185289
    362 6wyj:A (3.7) BS01 ASP ? GO:0005283 ... O59010 33597752
    363 6wyk:A (4.0) BS01 ASP ? GO:0005283 ... O59010 33597752
    364 6wyl:A (3.9) BS01 ASP ? GO:0005283 ... O59010 33597752
    365 6wyl:B (3.9) BS01 ASP ? GO:0005283 ... O59010 33597752
    366 6wyl:C (3.9) BS01 ASP ? GO:0005283 ... O59010 33597752
    367 6wyw:A (2.13) BS01 ASP 3.5.1.38 GO:0004067 ... Q88K39 N/A
    368 6wyw:B (2.13) BS01 ASP 3.5.1.38 GO:0004067 ... Q88K39 N/A
    369 6wyw:C (2.13) BS01 ASP 3.5.1.38 GO:0004067 ... Q88K39 N/A
    370 6wyw:D (2.13) BS01 ASP 3.5.1.38 GO:0004067 ... Q88K39 N/A
    371 6wyx:A (1.48) BS01 ASP 3.5.1.38 GO:0004067 ... Q88K39 N/A
    372 6wyx:B (1.48) BS01 ASP 3.5.1.38 GO:0004067 ... Q88K39 N/A
    373 6wyx:C (1.48) BS01 ASP 3.5.1.38 GO:0004067 ... Q88K39 N/A
    374 6wyx:D (1.48) BS01 ASP 3.5.1.38 GO:0004067 ... Q88K39 N/A
    375 6wz4:A (1.58) BS01 ASP 3.5.1.38 GO:0004067 ... Q88K39 N/A
    376 6wz4:B (1.58) BS01 ASP 3.5.1.38 GO:0004067 ... Q88K39 N/A
    377 6wz4:C (1.58) BS01 ASP 3.5.1.38 GO:0004067 ... Q88K39 N/A
    378 6wz4:D (1.58) BS01 ASP 3.5.1.38 GO:0004067 ... Q88K39 N/A
    379 6wzb:A (3.45) BS01 ASP ? GO:0005283 ... O59010 33597752
    380 6wzb:B (3.45) BS01 ASP ? GO:0005283 ... O59010 33597752
    381 6wzb:C (3.45) BS01 ASP ? GO:0005283 ... O59010 33597752
    382 6x01:A (3.65) BS01 ASP ? GO:0005283 ... O59010 33597752
    383 6x01:B (3.65) BS01 ASP ? GO:0005283 ... O59010 33597752
    384 6x01:C (3.65) BS01 ASP ? GO:0005283 ... O59010 33597752
    385 6x15:A (3.05) BS04 ASP ? GO:0005283 ... O59010 33155546
    386 6x15:B (3.05) BS04 ASP ? GO:0005283 ... O59010 33155546
    387 6x15:C (3.05) BS04 ASP ? GO:0005283 ... O59010 33155546
    388 6x2z:A (3.03) BS01 ASP ? GO:0001662 ... P43005 33658209
    389 6x3e:A (3.42) BS01 ASP ? GO:0001662 ... P43005 33658209
    390 6xwo:C (3.39) BS01 ASP ? GO:0015293 ... Q5JID0 32081874
    391 6xwp:B (3.38) BS01 ASP ? GO:0015293 ... Q5JID0 32081874
    392 6xwp:C (3.38) BS01 ASP ? GO:0015293 ... Q5JID0 32081874
    393 6xwq:A (3.41) BS01 ASP ? GO:0015293 ... Q5JID0 32081874
    394 6xwq:B (3.41) BS01 ASP ? GO:0015293 ... Q5JID0 32081874
    395 6xwq:C (3.41) BS01 ASP ? GO:0015293 ... Q5JID0 32081874
    396 7awm:A (3.25) BS01 ASP ? GO:0015293 ... P43003
    Q15758    		 34747040
    397 7awq:A (3.65) BS01 ASP ? GO:0015293 ... P43003
    Q15758    		 34747040
    398 7bu3:A (2.0) BS01 ASP 1.1.1.2 GO:0006631 ... P27250 32455802
    399 7cbu:A (2.25) BS02 ASP ? GO:0004067 ... A0A6I7U6Y2 33371681
    400 7cbu:B (2.25) BS03 ASP ? GO:0004067 ... A0A6I7U6Y2 33371681
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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