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BioLiP
Download all results in tab-seperated text for 49 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1eup:A (2.1) BS02 ASD 1.14.15.35 GO:0004497 ... Q00441 10716705
    2 1eup:A (2.1) BS03 ASD 1.14.15.35 GO:0004497 ... Q00441 10716705
    3 1qyx:A (1.89) BS01 ASD 1.1.1.51
    1.1.1.62    		 GO:0003824 ... P14061 14966133
    4 1xf0:A (2.0) BS02 ASD 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64    		 GO:0001523 ... P42330 15087468
    5 2vct:A (2.1) BS01 ASD 2.5.1.18 GO:0004364 ... P09210 20083122
    6 2vct:B (2.1) BS01 ASD 2.5.1.18 GO:0004364 ... P09210 20083122
    7 2vct:C (2.1) BS01 ASD 2.5.1.18 GO:0004364 ... P09210 20083122
    8 2vct:D (2.1) BS01 ASD 2.5.1.18 GO:0004364 ... P09210 20083122
    9 2vcv:A (1.8) BS02 ASD 2.5.1.18 GO:0004364 ... Q16772 20083122
    10 2vcv:B (1.8) BS03 ASD 2.5.1.18 GO:0004364 ... Q16772 20083122
    11 2vcv:D (1.8) BS03 ASD 2.5.1.18 GO:0004364 ... Q16772 20083122
    12 2vcv:E (1.8) BS02 ASD 2.5.1.18 GO:0004364 ... Q16772 20083122
    13 2vcv:F (1.8) BS03 ASD 2.5.1.18 GO:0004364 ... Q16772 20083122
    14 2vcv:G (1.8) BS02 ASD 2.5.1.18 GO:0004364 ... Q16772 20083122
    15 2vcv:H (1.8) BS03 ASD 2.5.1.18 GO:0004364 ... Q16772 20083122
    16 2vcv:I (1.8) BS02 ASD 2.5.1.18 GO:0004364 ... Q16772 20083122
    17 2vcv:K (1.8) BS02 ASD 2.5.1.18 GO:0004364 ... Q16772 20083122
    18 2vcv:L (1.8) BS03 ASD 2.5.1.18 GO:0004364 ... Q16772 20083122
    19 2vcv:P (1.8) BS03 ASD 2.5.1.18 GO:0004364 ... Q16772 20083122
    20 3cas:A (2.0) BS02 ASD 1.3.1.3 GO:0004032 ... P51857 19075558
    21 3cas:B (2.0) BS02 ASD 1.3.1.3 GO:0004032 ... P51857 19075558
    22 3eqm:A (2.9) BS02 ASD 1.14.14.14 GO:0002677 ... P11511 19129847 BindingDB: IC50=300nM, Ki=20nM
    23 3iw1:A (2.0) BS01 ASD 1.14.15.29 GO:0004497 ... P9WPP1 19846552
    24 3nbr:A (1.73) BS01 ASD 5.3.3.1 GO:0004769 ... P00947 N/A
    25 3nhx:A (1.59) BS01 ASD 5.3.3.1 GO:0004769 ... P00947 N/A
    26 3nuv:A (1.76) BS01 ASD 5.3.3.1 GO:0004769 ... P00947 N/A
    27 3nuv:B (1.76) BS01 ASD 5.3.3.1 GO:0004769 ... P00947 N/A
    28 3s79:A (2.75) BS02 ASD 1.14.14.14 GO:0002677 ... P11511 22951074 BindingDB: IC50=300nM, Ki=20nM
    29 3uzz:B (1.82) BS02 ASD 1.3.1.3 GO:0004032 ... P51857 22437839
    30 4at2:A (1.6) BS01 ASD 1.3.99.5 GO:0000166 ... Q0S4Q9 22833669
    31 4jbt:A (2.2) BS01 ASD ? GO:0004497 ... Q5YNS8 25372679
    32 4jbt:B (2.2) BS02 ASD ? GO:0004497 ... Q5YNS8 25372679
    33 4kq8:A (3.29) BS02 ASD 1.14.14.14 GO:0002677 ... P11511 23899247 BindingDB: IC50=300nM, Ki=20nM
    34 4qck:A (2.46) BS03 ASD 1.14.15.30 GO:0004497 ... P71875 25049233
    35 4qdc:A (1.9) BS03 ASD 1.14.15.30 GO:0004497 ... F1CMY8 25049233
    36 4xo7:A (1.75) BS02 ASD 1.-.-.-
    1.1.1.112
    1.1.1.209
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.3.1.20    		 GO:0004032 ... P52895 26929402
    37 4xo7:B (1.75) BS02 ASD 1.-.-.-
    1.1.1.112
    1.1.1.209
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.3.1.20    		 GO:0004032 ... P52895 26929402
    38 5jkv:A (2.75) BS02 ASD 1.14.14.14 GO:0002677 ... P11511 29476820 BindingDB: IC50=300nM, Ki=20nM
    39 5jl6:A (3.0) BS02 ASD 1.14.14.14 GO:0002677 ... P11511 29476820 BindingDB: IC50=300nM, Ki=20nM
    40 5jl7:A (3.1) BS02 ASD 1.14.14.14 GO:0002677 ... P11511 29476820 BindingDB: IC50=300nM, Ki=20nM
    41 5jl9:A (3.1) BS02 ASD 1.14.14.14 GO:0002677 ... P11511 29476820 BindingDB: IC50=300nM, Ki=20nM
    42 6tzd:A (1.4507) BS01 ASD 5.3.3.1 GO:0004769 ... P07445 33376217
    43 6tzd:B (1.4507) BS01 ASD 5.3.3.1 GO:0004769 ... P07445 33376217
    44 6ubq:A (1.2991) BS01 ASD 5.3.3.1 GO:0004769 ... P07445 33376217
    45 6ubq:B (1.2991) BS01 ASD 5.3.3.1 GO:0004769 ... P07445 33376217
    46 6ucy:A (1.15) BS01 ASD 5.3.3.1 GO:0004769 ... P07445 33376217
    47 6ucy:B (1.15) BS01 ASD 5.3.3.1 GO:0004769 ... P07445 33376217
    48 7cl9:A (1.95) BS02 ASD ? GO:0004497 ... Q82GL5 N/A
    49 8jbz:AAA (2.079) BS02 ASD 1.3.99.4 GO:0000166 ... Q9RA02 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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