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BioLiP
Download all results in tab-seperated text for 71 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1e71:M (1.5) BS01 ASC 3.2.1.147 GO:0004553 ... P29736 10978344
    2 1e72:M (1.6) BS01 ASC 3.2.1.147 GO:0004553 ... P29736 10978344
    3 1e73:M (1.5) BS01 ASC 3.2.1.147 GO:0004553 ... P29736 10978344
    4 1f9g:A (2.0) BS01 ASC 4.2.2.1 GO:0003824 ... Q54873 11278838 MOAD: Ki=53mM
    PDBbind: -logKd/Ki=1.28, Ki=53mM
    5 1oaf:A (1.4) BS02 ASC 1.11.1.11 GO:0004601 ... Q43758 12640445
    6 1xid:A (1.7) BS03 ASC 5.3.1.5 GO:0000287 ... P24300 15299449
    7 2x08:A (2.01) BS01 ASC 1.11.1.5 GO:0004601 ... P00431 19061385
    8 2ydg:A (2.0) BS02 ASC 3.2.1.17 GO:0003796 ... P00698 21525642
    9 2ylg:A (1.05) BS03 ASC ? GO:0005506 ... P00138 21900609
    10 3fxr:A (2.5) BS01 ASC ? GO:0000976 ... P94678 20059681
    11 3tgy:A (2.35) BS03 ASC 1.11.1.7 GO:0004601 ... P80025 27986533
    12 3vln:A (1.7) BS01 ASC 1.20.4.2
    1.8.5.1
    2.5.1.18    		 GO:0004364 ... P78417 22522127
    13 3vxi:A (1.5) BS02 ASC 1.11.1.19 GO:0004601 ... Q8WZK8 N/A
    14 4gpc:C (1.85) BS02 ASC 1.14.14.18 GO:0004392 ... Q54AI1 N/A
    15 4gph:C (1.7) BS02 ASC 1.14.14.18 GO:0004392 ... Q54AI1 N/A
    16 4jtp:A (1.85) BS01 ASC 3.2.2.22 GO:0000166 ... D9J2T9 N/A
    17 4o79:B (2.003) BS03 ASC 7.2.1.3 GO:0000293 ... Q9SWS1 24449903
    18 4o7g:A (2.211) BS03 ASC 7.2.1.3 GO:0000293 ... Q9SWS1 24449903
    19 4o7g:B (2.211) BS03 ASC 7.2.1.3 GO:0000293 ... Q9SWS1 24449903
    20 4o7g:B (2.211) BS04 ASC 7.2.1.3 GO:0000293 ... Q9SWS1 24449903
    21 4rp8:A (2.359) BS01 ASC ? GO:0005886 ... P39301 25686089 MOAD: Kd=6.1uM
    22 4rp8:C (2.359) BS01 ASC ? GO:0005886 ... P39301 25686089 MOAD: Kd=6.1uM
    23 4rp9:A (1.651) BS01 ASC ? GO:0005886 ... P39301 25686089 MOAD: Kd=6.1uM
    24 4tvt:A (1.2) BS01 ASC ? GO:0005576 ... P02883 26027487
    25 4tvt:A (1.2) BS02 ASC ? GO:0005576 ... P02883 26027487
    26 4tvt:A (1.2) BS03 ASC ? GO:0005576 ... P02883 26027487
    27 4tvt:A (1.2) BS04 ASC ? GO:0005576 ... P02883 26027487
    28 4twl:A (2.11) BS01 ASC 1.6.5.4
    4.2.1.1    		 GO:0000305 ... A7MAQ2 25747844
    29 4twl:B (2.11) BS01 ASC 1.6.5.4
    4.2.1.1    		 GO:0000305 ... A7MAQ2 25747844
    30 5d9w:A (1.6897) BS01 ASC 1.8.5.1
    2.5.1.18    		 GO:0004364 ... Q65XA0 26775680
    31 5jcn:A (2.29) BS03 ASC 1.6.5.4 GO:0000166 ... Q652L6 27652777
    32 5jcn:B (2.29) BS03 ASC 1.6.5.4 GO:0000166 ... Q652L6 27652777
    33 5jli:A (1.55) BS02 ASC ? GO:0005506 ... P00138 28451315
    34 5jra:A (1.38) BS02 ASC ? GO:0005506 ... P00138 28451315
    35 5js5:A (1.7) BS02 ASC ? GO:0005506 ... P00138 28451315
    36 5jsl:A (1.25) BS02 ASC ? GO:0005506 ... P00138 28451315
    37 5jt4:A (1.25) BS02 ASC ? GO:0005506 ... P00138 28451315
    38 5kkz:A (2.97) BS04 ASC ? GO:0005886 ... Q02761 27758861
    39 5kkz:C (2.97) BS02 ASC 7.1.1.8 GO:0005886 ... Q02762 27758861
    40 5kkz:E (2.97) BS04 ASC ? GO:0005886 ... Q02761 27758861
    41 5kkz:G (2.97) BS01 ASC 7.1.1.8 GO:0005886 ... Q02762 27758861
    42 5kkz:K (2.97) BS04 ASC ? GO:0005886 ... Q02761 27758861
    43 5kkz:O (2.97) BS04 ASC ? GO:0005886 ... Q02761 27758861
    44 5kkz:Q (2.97) BS01 ASC 7.1.1.8 GO:0005886 ... Q02762 27758861
    45 5zlg:A (2.8) BS03 ASC 7.2.1.3 GO:0005515 ... Q53TN4 30272000
    46 5zlg:A (2.8) BS04 ASC 7.2.1.3 GO:0005515 ... Q53TN4 30272000
    47 5zov:A (3.333) BS01 ASC ? GO:0009401 ... Q9CMQ1 30038796
    48 5zov:B (3.333) BS01 ASC ? GO:0009401 ... Q9CMQ1 30038796
    49 6jnh:A (2.0) BS01 ASC 2.7.7.3 GO:0003824 ... A0A059ZFC5 N/A
    50 6jnh:A (2.0) BS02 ASC 2.7.7.3 GO:0003824 ... A0A059ZFC5 N/A
    51 6jog:A (2.3) BS01 ASC 2.7.7.3 GO:0003824 ... A0A059ZFC5 N/A
    52 6jog:A (2.3) BS02 ASC 2.7.7.3 GO:0003824 ... A0A059ZFC5 N/A
    53 6xv4:A (1.9) BS02 ASC 1.11.1.11 GO:0004601 ... Q43758 32152099
    54 7cy5:A (2.2) BS02 ASC 1.14.99.- GO:0005506 ... A0A2K3D5Z7
    P0AEX9    		 33531488
    55 7cy8:A (2.4) BS03 ASC 1.14.99.- GO:0005506 ... A0A2K3D5Z7
    P0AEX9    		 33531488
    56 7mpb:A (2.3) BS01 ASC 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    57 7mpb:B (2.3) BS01 ASC 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    58 7ytw:A (3.2) BS03 ASC ? GO:0005737 ... Q9Z2J0 36914666
    59 7ytw:B (3.2) BS03 ASC ? GO:0005737 ... Q9Z2J0 36914666
    60 8djs:A (1.19) BS02 ASC 1.11.1.11 GO:0000302 ... C5WNL8 36575825
    61 8djt:A (1.16) BS02 ASC 1.11.1.11 GO:0000302 ... C5WNL8 36575825
    62 8djt:A (1.16) BS03 ASC 1.11.1.11 GO:0000302 ... C5WNL8 36575825
    63 8djt:A (1.16) BS04 ASC 1.11.1.11 GO:0000302 ... C5WNL8 36575825
    64 8djt:A (1.16) BS05 ASC 1.11.1.11 GO:0000302 ... C5WNL8 36575825
    65 8ff7:A (2.194) BS01 ASC 1.11.1.11 GO:0000302 ... A0A8T0NWI5 36675291
    66 8ff7:B (2.194) BS01 ASC 1.11.1.11 GO:0000302 ... A0A8T0NWI5 36675291
    67 8ff7:C (2.194) BS01 ASC 1.11.1.11 GO:0000302 ... A0A8T0NWI5 36675291
    68 8ff7:D (2.194) BS01 ASC 1.11.1.11 GO:0000302 ... A0A8T0NWI5 36675291
    69 8ff7:E (2.194) BS01 ASC 1.11.1.11 GO:0000302 ... A0A8T0NWI5 36675291
    70 8ff7:F (2.194) BS01 ASC 1.11.1.11 GO:0000302 ... A0A8T0NWI5 36675291
    71 8jew:A (2.49) BS01 ASC ? GO:0005515 ... Q9UHI7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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