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BioLiP
Download all results in tab-seperated text for 32 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1abe:A (1.7) BS01 ARA ? GO:0015407 ... P02924 6379466
    2 1bap:A (1.75) BS01 ARA ? GO:0015407 ... P02924 2204627 MOAD: Kd=0.14uM
    3 2arc:A (1.5) BS01 ARA ? GO:0006355 ... P0A9E0 9103202 MOAD: Kd=1mM
    4 2arc:B (1.5) BS01 ARA ? GO:0006355 ... P0A9E0 9103202 MOAD: Kd=1mM
    5 2e1s:A (2.7) BS01 ARA 3.4.21.- GO:0005576 ... P24627 N/A
    6 3a22:A (1.9) BS01 ARA 3.2.1.22 GO:0004553 ... Q82L26 19608743 MOAD: Ka=150M^-1
    7 3a22:A (1.9) BS02 ARA 3.2.1.22 GO:0004553 ... Q82L26 19608743 MOAD: Ka=150M^-1
    8 3a22:A (1.9) BS03 ARA 3.2.1.22 GO:0004553 ... Q82L26 19608743 MOAD: Ka=150M^-1
    9 3a22:A (1.9) BS04 ARA 3.2.1.22 GO:0004553 ... Q82L26 19608743 MOAD: Ka=150M^-1
    10 3a22:A (1.9) BS05 ARA 3.2.1.22 GO:0004553 ... Q82L26 19608743 MOAD: Ka=150M^-1
    11 3a22:B (1.9) BS01 ARA 3.2.1.22 GO:0004553 ... Q82L26 19608743 MOAD: Ka=150M^-1
    12 3a22:B (1.9) BS02 ARA 3.2.1.22 GO:0004553 ... Q82L26 19608743 MOAD: Ka=150M^-1
    13 3a22:B (1.9) BS03 ARA 3.2.1.22 GO:0004553 ... Q82L26 19608743 MOAD: Ka=150M^-1
    14 3a22:B (1.9) BS04 ARA 3.2.1.22 GO:0004553 ... Q82L26 19608743 MOAD: Ka=150M^-1
    15 3das:A (1.6) BS01 ARA ? N/A Q9Z571 N/A
    16 3das:A (1.6) BS02 ARA ? N/A Q9Z571 N/A
    17 4rxt:A (1.35) BS01 ARA ? GO:0030246 ... B9JKX8 N/A
    18 5deq:A (1.95) BS01 ARA ? GO:0016787 ... Q8AAV8 26438537
    19 5deq:B (1.95) BS01 ARA ? GO:0016787 ... Q8AAV8 26438537
    20 5glo:A (1.8) BS03 ARA ? GO:0004553 ... A0A0H5BL38 28204531
    21 5glo:B (1.8) BS03 ARA ? GO:0004553 ... A0A0H5BL38 28204531
    22 5glp:A (1.8) BS01 ARA ? GO:0004553 ... A0A0H5BL38 28204531
    23 5glp:A (1.8) BS02 ARA ? GO:0004553 ... A0A0H5BL38 28204531
    24 5glp:B (1.8) BS01 ARA ? GO:0004553 ... A0A0H5BL38 28204531
    25 5glp:B (1.8) BS02 ARA ? GO:0004553 ... A0A0H5BL38 28204531
    26 5glr:A (1.7) BS03 ARA ? GO:0004553 ... A0A0H5BL38 28204531
    27 5la0:A (1.65) BS04 ARA ? GO:0000272 ... A3DHG6 27531750
    28 5la0:A (1.65) BS05 ARA ? GO:0000272 ... A3DHG6 27531750
    29 5mwk:A (2.0) BS02 ARA ? N/A Q8A931 28329766
    30 6abp:A (1.67) BS01 ARA ? GO:0015407 ... P02924 2069949 MOAD: Kd=0.44uM
    PDBbind: -logKd/Ki=6.36, Kd=0.44uM
    31 6x8d:A (1.0) BS05 ARA ? N/A A1YIY3 33824212
    32 7cgq:A (2.208) BS02 ARA 1.1.1.120
    1.1.1.376
    1.1.1.48    		 GO:0000166 ... Q53TZ2 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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