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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 343 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 6pus:B (3.7) BS01 APR ? GO:0001659 ... O94759 31513012
    202 6pus:B (3.7) BS02 APR ? GO:0001659 ... O94759 31513012
    203 6pus:C (3.7) BS01 APR ? GO:0001659 ... O94759 31513012
    204 6pus:C (3.7) BS02 APR ? GO:0001659 ... O94759 31513012
    205 6pus:D (3.7) BS01 APR ? GO:0001659 ... O94759 31513012
    206 6pus:D (3.7) BS02 APR ? GO:0001659 ... O94759 31513012
    207 6r0g:A (1.7) BS01 APR 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q5Y389 32879358
    208 6r0g:B (1.7) BS01 APR 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q5Y389 32879358
    209 6vuq:A (1.64) BS01 APR 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q8JUX6 33482665
    210 6vuq:B (1.64) BS01 APR 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q8JUX6 33482665
    211 6vuq:C (1.64) BS01 APR 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q8JUX6 33482665
    212 6vuq:D (1.64) BS01 APR 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q8JUX6 33482665
    213 6w02:A (1.5) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 32939273
    214 6w02:B (1.5) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 32939273
    215 6woj:A (2.2) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33158944 MOAD: Kd=16.8uM
    216 6woj:B (2.2) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33158944 MOAD: Kd=16.8uM
    217 6woj:C (2.2) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33158944 MOAD: Kd=16.8uM
    218 6woj:D (2.2) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33158944 MOAD: Kd=16.8uM
    219 6y3j:A (2.6) BS01 APR 2.3.2.27 GO:0007219 ... Q86UW9 32937373
    220 6ywl:A (2.5) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33850605
    221 6ywl:B (2.5) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33850605
    222 6ywl:C (2.5) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33850605
    223 6ywl:D (2.5) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33850605
    224 6ywl:E (2.5) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33850605
    225 6z5t:A (1.571) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33202171
    226 6z5t:B (1.571) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33202171
    227 7bya:A (2.2) BS01 APR 1.1.1.37 GO:0000166 ... A0A143T1U9 33723609
    228 7bya:B (2.2) BS01 APR 1.1.1.37 GO:0000166 ... A0A143T1U9 33723609
    229 7bya:C (2.2) BS01 APR 1.1.1.37 GO:0000166 ... A0A143T1U9 33723609
    230 7bya:D (2.2) BS01 APR 1.1.1.37 GO:0000166 ... A0A143T1U9 33723609
    231 7c33:A (3.83) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 32946224
    232 7c33:B (3.83) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 32946224
    233 7c33:C (3.83) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 32946224
    234 7c33:D (3.83) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 32946224
    235 7cz4:A (2.64) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 32946224
    236 7cz4:B (2.64) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 32946224
    237 7ny7:A (2.0) BS01 APR ? N/A A0A0D2UG83 34887560
    238 7omu:AAA (2.96) BS01 APR 2.4.2.-
    3.2.2.-    		 GO:0003677 ... K2PFJ6 34408320
    239 7omu:BBB (2.96) BS01 APR 2.4.2.-
    3.2.2.-    		 GO:0003677 ... K2PFJ6 34408320
    240 7qlq:AAA (2.6) BS02 APR 1.1.1.77 GO:0000166 ... P0A9S1 37261425
    241 7qlq:BBB (2.6) BS02 APR 1.1.1.77 GO:0000166 ... P0A9S1 37261425
    242 7qls:AAA (2.4) BS02 APR 1.1.1.77 GO:0000166 ... P0A9S1 37261425
    243 7qls:BBB (2.4) BS02 APR 1.1.1.77 GO:0000166 ... P0A9S1 37261425
    244 7qnf:AAA (2.14) BS02 APR 1.1.1.77 GO:0000166 ... P0A9S1 36002154
    245 7qnf:BBB (2.14) BS02 APR 1.1.1.77 GO:0000166 ... P0A9S1 36002154
    246 7r3d:AAA (1.4) BS01 APR 1.1.1.77 GO:0000166 ... P0A9S1 36002154
    247 7r3d:BBB (1.4) BS01 APR 1.1.1.77 GO:0000166 ... P0A9S1 36002154
    248 7r5t:AAA (1.85) BS02 APR 1.1.1.77 GO:0000166 ... P0A9S1 36002154
    249 7r5t:BBB (1.85) BS02 APR 1.1.1.77 GO:0000166 ... P0A9S1 36002154
    250 7sz3:A (2.2) BS01 APR ? N/A Q3UPF5 36288691
    251 7sz3:B (2.2) BS01 APR ? N/A Q3UPF5 36288691
    252 7tgq:A (2.0) BS02 APR ? N/A Q7Z2W4 35130321
    253 7tx5:A (1.95) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 35622909
    254 7xjp:A (2.71) BS01 APR ? GO:0000304 ... Q9SU72 35857644
    255 7xjp:B (2.71) BS01 APR 3.1.1.1 GO:0006629 ... Q4F883 35857644
    256 7xn5:B (3.18) BS02 APR 4.3.99.- GO:0005516 ... Q7NWF2 36423631
    257 7xn6:B (3.45) BS01 APR 4.3.99.- GO:0005516 ... Q7NWF2 36423631
    258 7xoz:A (2.52) BS01 APR 3.2.2.6 GO:0007165 ... A0A654FE24 35857644
    259 7xoz:B (2.52) BS01 APR 3.2.2.6 GO:0007165 ... A0A654FCP3 35857644
    260 7z7h:F (3.8) BS01 APR ? GO:0005515 ... P0AEX9
    Q8GF97    		 35858890
    261 7z7i:A (3.5) BS01 APR 3.6.4.- GO:0000287 ... P68135 35858890
    262 7z7i:A (3.5) BS03 APR 3.6.4.- GO:0000287 ... P68135 35858890
    263 7z7i:B (3.5) BS02 APR 3.6.4.- GO:0000287 ... P68135 35858890
    264 7z7i:C (3.5) BS02 APR 3.6.4.- GO:0000287 ... P68135 35858890
    265 7z7i:D (3.5) BS02 APR 3.6.4.- GO:0000287 ... P68135 35858890
    266 7z7i:E (3.5) BS02 APR 3.6.4.- GO:0000287 ... P68135 35858890
    267 8azd:A (2.0) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 N/A
    268 8azd:B (2.0) BS01 APR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 N/A
    269 8bar:A (1.63) BS03 APR ? GO:0000166 ... A0A794RBZ4 37390817
    270 8e6q:A (3.4) BS01 APR N/A N/A O94759 N/A
    271 8e6q:A (3.4) BS02 APR N/A N/A O94759 N/A
    272 8e6q:B (3.4) BS01 APR N/A N/A O94759 N/A
    273 8e6q:B (3.4) BS02 APR N/A N/A O94759 N/A
    274 8e6q:C (3.4) BS01 APR N/A N/A O94759 N/A
    275 8e6q:C (3.4) BS02 APR N/A N/A O94759 N/A
    276 8e6q:D (3.4) BS01 APR N/A N/A O94759 N/A
    277 8e6q:D (3.4) BS02 APR N/A N/A O94759 N/A
    278 8e6r:A (5.6) BS01 APR N/A N/A O94759 N/A
    279 8e6r:B (5.6) BS01 APR N/A N/A O94759 N/A
    280 8e6r:C (5.6) BS01 APR N/A N/A O94759 N/A
    281 8e6r:D (5.6) BS01 APR N/A N/A O94759 N/A
    282 8e6s:A (4.6) BS01 APR N/A N/A O94759 N/A
    283 8e6s:B (4.6) BS01 APR N/A N/A O94759 N/A
    284 8e6s:C (4.6) BS01 APR N/A N/A O94759 N/A
    285 8e6s:D (4.6) BS01 APR N/A N/A O94759 N/A
    286 8e6v:A (3.3) BS01 APR N/A N/A O94759 N/A
    287 8e6v:A (3.3) BS02 APR N/A N/A O94759 N/A
    288 8p0e:A (1.59) BS01 APR 2.7.7.48
    3.6.1.15
    3.6.4.13    		 N/A G3M8F4 38289106
    289 8p0e:B (1.59) BS01 APR 2.7.7.48
    3.6.1.15
    3.6.4.13    		 N/A G3M8F4 38289106
    290 8qg1:B (2.0) BS03 APR 7.1.1.- GO:0008137 ... O66841 38503292
    291 8qg1:D (2.0) BS03 APR 7.1.1.- GO:0008137 ... O66841 38503292
    292 8srb:A (2.82) BS01 APR ? GO:0005216 ... F2UB89 38773335
    293 8srb:B (2.82) BS02 APR ? GO:0005216 ... F2UB89 38773335
    294 8srb:C (2.82) BS02 APR ? GO:0005216 ... F2UB89 38773335
    295 8srb:D (2.82) BS04 APR ? GO:0005216 ... F2UB89 38773335
    296 8src:A (2.92) BS01 APR ? GO:0005216 ... F2UB89 38773335
    297 8src:A (2.92) BS07 APR ? GO:0005216 ... F2UB89 38773335
    298 8src:B (2.92) BS02 APR ? GO:0005216 ... F2UB89 38773335
    299 8src:B (2.92) BS08 APR ? GO:0005216 ... F2UB89 38773335
    300 8src:C (2.92) BS02 APR ? GO:0005216 ... F2UB89 38773335
    301 8src:C (2.92) BS08 APR ? GO:0005216 ... F2UB89 38773335
    302 8src:D (2.92) BS04 APR ? GO:0005216 ... F2UB89 38773335
    303 8src:D (2.92) BS10 APR ? GO:0005216 ... F2UB89 38773335
    304 8srd:A (2.91) BS01 APR ? GO:0005216 ... F2UB89 N/A
    305 8srd:A (2.91) BS04 APR ? GO:0005216 ... F2UB89 N/A
    306 8srd:B (2.91) BS02 APR ? GO:0005216 ... F2UB89 N/A
    307 8srd:B (2.91) BS05 APR ? GO:0005216 ... F2UB89 N/A
    308 8srd:C (2.91) BS02 APR ? GO:0005216 ... F2UB89 N/A
    309 8srd:C (2.91) BS05 APR ? GO:0005216 ... F2UB89 N/A
    310 8srd:D (2.91) BS03 APR ? GO:0005216 ... F2UB89 N/A
    311 8srd:D (2.91) BS06 APR ? GO:0005216 ... F2UB89 N/A
    312 8sre:A (2.52) BS01 APR ? GO:0005216 ... F2UB89 N/A
    313 8sre:A (2.52) BS07 APR ? GO:0005216 ... F2UB89 N/A
    314 8sre:B (2.52) BS02 APR ? GO:0005216 ... F2UB89 N/A
    315 8sre:B (2.52) BS08 APR ? GO:0005216 ... F2UB89 N/A
    316 8sre:C (2.52) BS04 APR ? GO:0005216 ... F2UB89 N/A
    317 8sre:C (2.52) BS10 APR ? GO:0005216 ... F2UB89 N/A
    318 8sre:D (2.52) BS03 APR ? GO:0005216 ... F2UB89 N/A
    319 8sre:D (2.52) BS09 APR ? GO:0005216 ... F2UB89 N/A
    320 8srf:A (2.52) BS03 APR ? GO:0005216 ... F2UB89 N/A
    321 8srf:B (2.52) BS04 APR ? GO:0005216 ... F2UB89 N/A
    322 8srf:C (2.52) BS04 APR ? GO:0005216 ... F2UB89 N/A
    323 8srf:D (2.52) BS06 APR ? GO:0005216 ... F2UB89 N/A
    324 8srh:A (3.79) BS01 APR ? GO:0005216 ... F2UB89 N/A
    325 8srh:A (3.79) BS03 APR ? GO:0005216 ... F2UB89 N/A
    326 8srh:B (3.79) BS02 APR ? GO:0005216 ... F2UB89 N/A
    327 8srh:B (3.79) BS04 APR ? GO:0005216 ... F2UB89 N/A
    328 8srh:C (3.79) BS02 APR ? GO:0005216 ... F2UB89 N/A
    329 8srh:C (3.79) BS04 APR ? GO:0005216 ... F2UB89 N/A
    330 8srh:D (3.79) BS04 APR ? GO:0005216 ... F2UB89 N/A
    331 8srh:D (3.79) BS06 APR ? GO:0005216 ... F2UB89 N/A
    332 8sri:A (2.73) BS01 APR ? GO:0005216 ... F2UB89 N/A
    333 8sri:A (2.73) BS05 APR ? GO:0005216 ... F2UB89 N/A
    334 8sri:B (2.73) BS02 APR ? GO:0005216 ... F2UB89 N/A
    335 8sri:B (2.73) BS06 APR ? GO:0005216 ... F2UB89 N/A
    336 8sri:C (2.73) BS02 APR ? GO:0005216 ... F2UB89 N/A
    337 8sri:C (2.73) BS06 APR ? GO:0005216 ... F2UB89 N/A
    338 8sri:D (2.73) BS04 APR ? GO:0005216 ... F2UB89 N/A
    339 8sri:D (2.73) BS08 APR ? GO:0005216 ... F2UB89 N/A
    340 8srk:A (4.14) BS01 APR ? GO:0005216 ... F2UB89 N/A
    341 8srk:B (4.14) BS02 APR ? GO:0005216 ... F2UB89 N/A
    342 8srk:C (4.14) BS02 APR ? GO:0005216 ... F2UB89 N/A
    343 8srk:D (4.14) BS04 APR ? GO:0005216 ... F2UB89 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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