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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ftm:A (1.7) BS02 AMQ ? GO:0015276 ... P19491 11086992 MOAD: Kd=24.8nM
    PDBbind: -logKd/Ki=7.61, Kd=24.8nM
    BindingDB: Ki=17nM
    2 1ftm:B (1.7) BS03 AMQ ? GO:0015276 ... P19491 11086992 MOAD: Kd=24.8nM
    BindingDB: Ki=17nM
    3 1ftm:C (1.7) BS02 AMQ ? GO:0015276 ... P19491 11086992 MOAD: Kd=24.8nM
    BindingDB: Ki=17nM
    4 1lb8:A (2.3) BS01 AMQ ? GO:0015276 ... P19491 12015593 BindingDB: Ki=17nM
    5 1lb8:B (2.3) BS01 AMQ ? GO:0015276 ... P19491 12015593 BindingDB: Ki=17nM
    6 1my2:A (1.8) BS02 AMQ ? GO:0015276 ... P19491 12731861 BindingDB: Ki=17nM
    7 1my2:B (1.8) BS03 AMQ ? GO:0015276 ... P19491 12731861 BindingDB: Ki=17nM
    8 1my2:C (1.8) BS02 AMQ ? GO:0015276 ... P19491 12731861 BindingDB: Ki=17nM
    9 1p1q:A (2.0) BS02 AMQ ? GO:0015276 ... P19491 12730367 MOAD: Kd=12.8uM
    BindingDB: Ki=17nM
    10 1p1q:B (2.0) BS03 AMQ ? GO:0015276 ... P19491 12730367 MOAD: Kd=12.8uM
    BindingDB: Ki=17nM
    11 1p1q:C (2.0) BS02 AMQ ? GO:0015276 ... P19491 12730367 MOAD: Kd=12.8uM
    BindingDB: Ki=17nM
    12 1p1u:A (2.0) BS01 AMQ ? GO:0015276 ... P19491 12730367 BindingDB: Ki=17nM
    13 1p1u:B (2.0) BS01 AMQ ? GO:0015276 ... P19491 12730367 BindingDB: Ki=17nM
    14 1p1w:A (1.8) BS01 AMQ ? GO:0015276 ... P19491 12730367 BindingDB: Ki=17nM
    15 1p1w:B (1.8) BS01 AMQ ? GO:0015276 ... P19491 12730367 BindingDB: Ki=17nM
    16 3dp4:A (2.11) BS01 AMQ ? GO:0015276 ... P19492 19003990 MOAD: Kd=43nM
    PDBbind: -logKd/Ki=7.37, Kd=43nM
    BindingDB: Ki=21nM
    17 3fat:A (1.9) BS01 AMQ ? GO:0015276 ... P19493 19022251 MOAD: Kd=22.8nM
    PDBbind: -logKd/Ki=7.64, Kd=22.8nM
    BindingDB: Ki=40nM
    18 3fat:B (1.9) BS01 AMQ ? GO:0015276 ... P19493 19022251 MOAD: Kd=22.8nM
    BindingDB: Ki=40nM
    19 3fat:C (1.9) BS01 AMQ ? GO:0015276 ... P19493 19022251 MOAD: Kd=22.8nM
    BindingDB: Ki=40nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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