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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1rpj:A (1.8) BS01 ALL ? GO:0015752 ... P39265 10064713 MOAD: Kd=0.33uM
    PDBbind: -logKd/Ki=6.48, Kd=0.33uM
    2 2nc3:A (-1.00) BS01 ALL N/A N/A N/A 27249581
    3 5dte:A (2.7) BS01 ALL 3.6.3.17 GO:0016787 ... A6VKG5 N/A
    4 5dte:B (2.7) BS01 ALL 3.6.3.17 GO:0016787 ... A6VKG5 N/A
    5 5dte:C (2.7) BS01 ALL 3.6.3.17 GO:0016787 ... A6VKG5 N/A
    6 5dte:D (2.7) BS01 ALL 3.6.3.17 GO:0016787 ... A6VKG5 N/A
    7 6l68:A (1.92) BS01 ALL ? GO:0002667 ... Q05315 32081418
    8 6l68:A (1.92) BS02 ALL ? GO:0002667 ... Q05315 32081418
    9 8jq6:A (1.71) BS03 ALL 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    10 8jq6:A (1.71) BS04 ALL 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    11 8jq6:B (1.71) BS03 ALL 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    12 8jq6:D (1.71) BS04 ALL 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    13 8jq6:D (1.71) BS05 ALL 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    14 8wl7:A (1.74) BS01 ALL ? GO:0030246 ... A0A9W3L9M6 37820454
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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