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BioLiP
Download all results in tab-seperated text for 465 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 8dfc:F (2.48) BS04 ALF 1.18.6.1 GO:0005524 ... P00459 38575747
    402 8dfd:E (2.12) BS03 ALF 1.18.6.1 GO:0005524 ... P00459 38575747
    403 8dfd:F (2.12) BS04 ALF 1.18.6.1 GO:0005524 ... P00459 38575747
    404 8dfd:G (2.12) BS02 ALF 1.18.6.1 GO:0005524 ... P00459 38575747
    405 8dfd:H (2.12) BS04 ALF 1.18.6.1 GO:0005524 ... P00459 38575747
    406 8eew:A (5.48) BS02 ALF 3.6.5.5 GO:0003924 ... O60313 37612506
    407 8eew:B (5.48) BS02 ALF 3.6.5.5 GO:0003924 ... O60313 37612506
    408 8eff:A (5.48) BS02 ALF 3.6.5.5 GO:0003924 ... O60313 37612506
    409 8eff:B (5.48) BS02 ALF 3.6.5.5 GO:0003924 ... O60313 37612506
    410 8eff:C (5.48) BS02 ALF 3.6.5.5 GO:0003924 ... O60313 37612506
    411 8eff:D (5.48) BS02 ALF 3.6.5.5 GO:0003924 ... O60313 37612506
    412 8efr:A (5.48) BS02 ALF 3.6.5.5 GO:0003924 ... O60313 37612506
    413 8efr:B (5.48) BS02 ALF 3.6.5.5 GO:0003924 ... O60313 37612506
    414 8efr:C (5.48) BS02 ALF 3.6.5.5 GO:0003924 ... O60313 37612506
    415 8efr:D (5.48) BS02 ALF 3.6.5.5 GO:0003924 ... O60313 37612506
    416 8efr:E (5.48) BS02 ALF 3.6.5.5 GO:0003924 ... O60313 37612506
    417 8efr:F (5.48) BS02 ALF 3.6.5.5 GO:0003924 ... O60313 37612506
    418 8efr:G (5.48) BS02 ALF 3.6.5.5 GO:0003924 ... O60313 37612506
    419 8efr:H (5.48) BS02 ALF 3.6.5.5 GO:0003924 ... O60313 37612506
    420 8efr:I (5.48) BS02 ALF 3.6.5.5 GO:0003924 ... O60313 37612506
    421 8efr:J (5.48) BS02 ALF 3.6.5.5 GO:0003924 ... O60313 37612506
    422 8efr:K (5.48) BS02 ALF 3.6.5.5 GO:0003924 ... O60313 37612506
    423 8efr:L (5.48) BS02 ALF 3.6.5.5 GO:0003924 ... O60313 37612506
    424 8efr:M (5.48) BS02 ALF 3.6.5.5 GO:0003924 ... O60313 37612506
    425 8efr:N (5.48) BS02 ALF 3.6.5.5 GO:0003924 ... O60313 37612506
    426 8efr:O (5.48) BS02 ALF 3.6.5.5 GO:0003924 ... O60313 37612506
    427 8efr:P (5.48) BS02 ALF 3.6.5.5 GO:0003924 ... O60313 37612506
    428 8efr:Q (5.48) BS02 ALF 3.6.5.5 GO:0003924 ... O60313 37612506
    429 8efr:R (5.48) BS02 ALF 3.6.5.5 GO:0003924 ... O60313 37612506
    430 8gj0:C (2.9) BS05 ALF 2.7.7.7 GO:0003677 ... P06710 N/A
    431 8gj0:D (2.9) BS04 ALF 2.7.7.7 GO:0003677 ... P06710 N/A
    432 8gj1:B (3.0) BS04 ALF 2.7.7.7 GO:0003677 ... P06710 N/A
    433 8gj1:C (3.0) BS04 ALF 2.7.7.7 GO:0003677 ... P06710 N/A
    434 8gj1:D (3.0) BS04 ALF 2.7.7.7 GO:0003677 ... P06710 N/A
    435 8gj2:B (2.6) BS03 ALF 2.7.7.7 GO:0003677 ... P06710 N/A
    436 8gj2:C (2.6) BS03 ALF 2.7.7.7 GO:0003677 ... P06710 N/A
    437 8gj2:D (2.6) BS03 ALF 2.7.7.7 GO:0003677 ... P06710 N/A
    438 8gj3:B (2.8) BS04 ALF 2.7.7.7 GO:0003677 ... P06710 N/A
    439 8gj3:C (2.8) BS04 ALF 2.7.7.7 GO:0003677 ... P06710 N/A
    440 8gj3:D (2.8) BS04 ALF 2.7.7.7 GO:0003677 ... P06710 N/A
    441 8ien:P (3.25) BS02 ALF 7.6.2.- GO:0000166 ... Q9NQ11 37031211
    442 8ieo:P (3.78) BS01 ALF 7.6.2.- GO:0000166 ... Q9NQ11 37031211
    443 8ies:P (3.73) BS01 ALF 7.6.2.- GO:0000166 ... Q9NQ11 37031211
    444 8ijl:A (2.62) BS01 ALF 7.2.2.13
    7.2.2.19    		 GO:0000166 ... P54708 37482134
    445 8iwu:A (3.31) BS02 ALF 7.2.2.10 GO:0000139 ... P98194 37258749
    446 8jpb:Q (3.07) BS03 ALF ? GO:0001508 ... P50148 37532940
    447 8jpc:Q (3.07) BS03 ALF ? GO:0001508 ... P50148 37532940
    448 8jpe:Q (2.91) BS03 ALF ? GO:0001508 ... P50148 37532940
    449 8k1l:A (3.44) BS01 ALF 7.2.2.13 GO:0000166 ... P17326 38079564
    450 8oo7:G (2.8) BS03 ALF N/A GO:0003677 ... N/A 37384673
    451 8oo9:G (3.2) BS04 ALF N/A GO:0003677 ... N/A 37384673
    452 8oop:G (2.7) BS04 ALF N/A GO:0003677 ... N/A 37384673
    453 8oos:G (3.29) BS04 ALF N/A GO:0003677 ... N/A 37384673
    454 8ox5:A (2.9) BS02 ALF 7.6.2.1 GO:0000166 ... O43520 37980352
    455 8ox6:A (2.39) BS02 ALF 7.6.2.1 GO:0000166 ... O43520 37980352
    456 8q75:A (3.2) BS01 ALF N/A GO:0005524 ... Q6H7M3 38538615
    457 8tsi:A (4.4) BS02 ALF ? GO:0005524 ... A0A2S5T4B3 38570679
    458 8tsi:A (4.4) BS03 ALF ? GO:0005524 ... A0A2S5T4B3 38570679
    459 8tsi:B (4.4) BS02 ALF ? GO:0005524 ... A0A2S5T4B3 38570679
    460 8tsi:B (4.4) BS03 ALF ? GO:0005524 ... A0A2S5T4B3 38570679
    461 8uqn:A (3.4) BS02 ALF ? GO:0001508 ... P50148 37991948
    462 8uqo:A (3.37) BS02 ALF ? GO:0001508 ... P50148 37991948
    463 8wa5:A (2.51) BS01 ALF 7.2.2.19 GO:0000166 ... P19156 38072058
    464 8xak:A (3.5) BS03 ALF N/A N/A N/A 39030241
    465 8xak:C (3.5) BS03 ALF N/A N/A N/A 39030241
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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