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BioLiP
Download all results in tab-seperated text for 465 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1agr:A (2.8) BS02 ALF ? GO:0000287 ... P10824 9108480
    2 1agr:D (2.8) BS02 ALF ? GO:0000287 ... P10824 9108480
    3 1br1:A (3.5) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    4 1br1:C (3.5) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    5 1br1:E (3.5) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    6 1br1:G (3.5) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    7 1br2:A (2.9) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    8 1br2:B (2.9) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    9 1br2:C (2.9) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    10 1br2:D (2.9) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    11 1br2:E (2.9) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    12 1br2:F (2.9) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    13 1fqj:A (2.02) BS02 ALF ? GO:0003924 ... P04695
    P10824    		 11234020
    14 1fqj:D (2.02) BS02 ALF ? GO:0003924 ... P04695
    P10824    		 11234020
    15 1fqk:A (2.3) BS02 ALF ? GO:0003924 ... P04695
    P10824    		 11234020
    16 1fqk:C (2.3) BS02 ALF ? GO:0003924 ... P04695
    P10824    		 11234020
    17 1g18:A (3.8) BS01 ALF 3.1.-.- GO:0003677 ... P9WHJ3 11121488
    18 1gfi:A (2.2) BS02 ALF ? GO:0000287 ... P10824 8073283
    19 1h8e:B (2.0) BS02 ALF 3.6.1.34 GO:0005515 ... P19483 11509182
    20 1h8e:C (2.0) BS02 ALF 3.6.1.34 GO:0005515 ... P19483 11509182
    21 1h8e:D (2.0) BS02 ALF 7.1.2.2 GO:0005515 ... P00829 11509182
    22 1h8e:F (2.0) BS02 ALF 7.1.2.2 GO:0005515 ... P00829 11509182
    23 1l7n:A (1.8) BS01 ALF 3.1.3.3 GO:0000287 ... Q58989 12051918
    24 1l7n:B (1.8) BS01 ALF 3.1.3.3 GO:0000287 ... Q58989 12051918
    25 1m34:E (2.3) BS01 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    26 1m34:F (2.3) BS01 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    27 1m34:F (2.3) BS04 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    28 1m34:G (2.3) BS01 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    29 1m34:H (2.3) BS03 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    30 1m34:M (2.3) BS01 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    31 1m34:N (2.3) BS03 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    32 1m34:O (2.3) BS01 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    33 1m34:P (2.3) BS01 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    34 1m34:P (2.3) BS04 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    35 1mnd:A (2.6) BS02 ALF 3.6.1.32 GO:0003774 ... P08799 7619795
    36 1n2c:E (3.0) BS02 ALF 1.18.6.1 GO:0005524 ... P00459 9163420
    37 1n2c:F (3.0) BS03 ALF 1.18.6.1 GO:0005524 ... P00459 9163420
    38 1n2c:G (3.0) BS02 ALF 1.18.6.1 GO:0005524 ... P00459 9163420
    39 1n2c:H (3.0) BS04 ALF 1.18.6.1 GO:0005524 ... P00459 9163420
    40 1oh9:A (1.91) BS03 ALF 2.7.2.8 GO:0003991 ... P0A6C8 12875848
    41 1qf9:A (1.7) BS01 ALF 2.7.4.14 GO:0000287 ... P20425 10426946
    42 1rk2:A (2.25) BS02 ALF 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    43 1rk2:B (2.25) BS02 ALF 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    44 1rk2:C (2.25) BS02 ALF 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    45 1rk2:D (2.25) BS02 ALF 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    46 1shz:A (2.85) BS02 ALF ? GO:0003924 ... P10824
    P27601    		 15665872
    47 1shz:D (2.85) BS02 ALF ? GO:0003924 ... P10824
    P27601    		 15665872
    48 1svk:A (2.0) BS02 ALF 3.6.1.46 GO:0000287 ... P10824 15128951
    49 1t5t:A (2.9) BS01 ALF 7.2.2.10 GO:0000166 ... P04191 15192230
    50 1tad:A (1.7) BS02 ALF ? GO:0000035 ... P04695 7969474
    51 1tad:B (1.7) BS02 ALF ? GO:0000035 ... P04695 7969474
    52 1tad:C (1.7) BS02 ALF ? GO:0000035 ... P04695 7969474
    53 1tx4:B (1.65) BS02 ALF 3.6.5.2 GO:0000902 ... P61586 9338791
    54 1w9j:A (2.0) BS03 ALF 3.6.4.1 GO:0003774 ... P08799 N/A
    55 1w9l:A (1.95) BS03 ALF 3.6.4.1 GO:0003774 ... P08799 N/A
    56 1xp5:A (3.0) BS02 ALF 7.2.2.10 GO:0000166 ... P04191 15618517
    57 1z5b:A (2.0) BS01 ALF 5.6.2.2 GO:0003676 ... O05207 15939019
    58 1z5b:B (2.0) BS01 ALF 5.6.2.2 GO:0003676 ... O05207 15939019
    59 1zca:A (2.9) BS02 ALF ? GO:0001664 ... P27600 16388592
    60 1zca:B (2.9) BS02 ALF ? GO:0001664 ... P27600 16388592
    61 2b8w:A (2.22) BS02 ALF 3.6.1.-
    3.6.5.-    		 GO:0003924 ... P32455 16511497
    62 2b8w:B (2.22) BS02 ALF 3.6.1.-
    3.6.5.-    		 GO:0003924 ... P32455 16511497
    63 2bcj:Q (3.061) BS02 ALF ? GO:0001501 ... P10824
    P21279    		 16339447
    64 2cnw:A (2.39) BS02 ALF 3.6.5.4 GO:0003924 ... O07347 16780874
    65 2cnw:B (2.39) BS02 ALF 3.6.5.4 GO:0003924 ... O07347 16780874
    66 2cnw:C (2.39) BS02 ALF 3.6.5.4 GO:0003924 ... O07347 16780874
    67 2cnw:D (2.39) BS03 ALF 3.6.5.4 GO:0003924 ... P83749 16780874
    68 2cnw:E (2.39) BS03 ALF 3.6.5.4 GO:0003924 ... P83749 16780874
    69 2cnw:F (2.39) BS03 ALF 3.6.5.4 GO:0003924 ... P83749 16780874
    70 2f90:A (2.0) BS01 ALF 5.4.2.11
    5.4.2.4    		 GO:0003824 ... P07738 17052986
    71 2f90:B (2.0) BS01 ALF 5.4.2.11
    5.4.2.4    		 GO:0003824 ... P07738 17052986
    72 2g83:A (2.8) BS02 ALF ? GO:0003924 ... P63096 16981699
    73 2g83:B (2.8) BS02 ALF ? GO:0003924 ... P63096 16981699
    74 2gj8:A (1.7) BS01 ALF 3.6.-.- GO:0005525 ... P25522 16763562
    75 2gj8:B (1.7) BS01 ALF 3.6.-.- GO:0005525 ... P25522 16763562
    76 2gj8:C (1.7) BS01 ALF 3.6.-.- GO:0005525 ... P25522 16763562
    77 2gj8:D (1.7) BS01 ALF 3.6.-.- GO:0005525 ... P25522 16763562
    78 2gj9:A (2.0) BS01 ALF 3.6.-.- GO:0005525 ... P25522 16763562
    79 2gj9:B (2.0) BS01 ALF 3.6.-.- GO:0005525 ... P25522 16763562
    80 2gj9:C (2.0) BS01 ALF 3.6.-.- GO:0005525 ... P25522 16763562
    81 2gj9:D (2.0) BS01 ALF 3.6.-.- GO:0005525 ... P25522 16763562
    82 2gja:A (1.85) BS01 ALF 3.6.-.- GO:0005525 ... P25522 16763562
    83 2gja:B (1.85) BS01 ALF 3.6.-.- GO:0005525 ... P25522 16763562
    84 2gtp:A (2.55) BS01 ALF ? GO:0000287 ... P63096 18434541
    85 2gtp:B (2.55) BS01 ALF ? GO:0000287 ... P63096 18434541
    86 2i7d:A (1.2) BS02 ALF 3.1.3.- GO:0000166 ... Q8TCD5 N/A
    87 2i7d:B (1.2) BS02 ALF 3.1.3.- GO:0000166 ... Q8TCD5 N/A
    88 2ihb:A (2.71) BS01 ALF ? GO:0000139 ... P08754 18434541
    89 2ik8:A (2.71) BS01 ALF ? GO:0000287 ... P63096 18434541
    90 2ik8:C (2.71) BS01 ALF ? GO:0000287 ... P63096 18434541
    91 2ode:A (1.9) BS01 ALF ? GO:0000139 ... P08754 18434541
    92 2ode:C (1.9) BS01 ALF ? GO:0000139 ... P08754 18434541
    93 2rgn:A (3.5) BS01 ALF ? GO:0001501 ... P10824
    P21279    		 18096806
    94 2rgn:D (3.5) BS01 ALF ? GO:0001501 ... P10824
    P21279    		 18096806
    95 2v4z:A (2.8) BS02 ALF ? GO:0000139 ... P08754 19478087
    96 2wf6:A (1.4) BS01 ALF 5.4.2.6 GO:0000287 ... P71447 20164409
    97 2wf7:A (1.05) BS01 ALF 5.4.2.6 GO:0000287 ... P71447 25104750
    98 2woj:A (1.994) BS02 ALF 3.6.-.- GO:0000750 ... Q12154 19675567
    99 2woj:A (1.994) BS05 ALF 3.6.-.- GO:0000750 ... Q12154 19675567
    100 2woj:B (1.994) BS02 ALF 3.6.-.- GO:0000750 ... Q12154 19675567
    101 2woj:B (1.994) BS05 ALF 3.6.-.- GO:0000750 ... Q12154 19675567
    102 2woj:C (1.994) BS02 ALF 3.6.-.- GO:0000750 ... Q12154 19675567
    103 2woj:C (1.994) BS05 ALF 3.6.-.- GO:0000750 ... Q12154 19675567
    104 2woj:D (1.994) BS02 ALF 3.6.-.- GO:0000750 ... Q12154 19675567
    105 2woj:D (1.994) BS05 ALF 3.6.-.- GO:0000750 ... Q12154 19675567
    106 2wzc:A (1.5) BS01 ALF 2.7.2.3 GO:0004618 ... P00558 20397725
    107 2x2e:A (2.0) BS02 ALF 3.6.5.5 GO:0003924 ... Q05193 20428113
    108 2x2e:D (2.0) BS02 ALF 3.6.5.5 GO:0003924 ... Q05193 20428113
    109 2x2f:A (2.0) BS02 ALF 3.6.5.5 GO:0003924 ... Q05193 20428113
    110 2x2f:D (2.0) BS02 ALF 3.6.5.5 GO:0003924 ... Q05193 20428113
    111 2xzl:A (2.4) BS06 ALF 3.6.4.12
    3.6.4.13    		 GO:0000184 ... P30771 21419344
    112 2xzo:A (2.395) BS03 ALF 3.6.4.12
    3.6.4.13    		 GO:0003677 ... Q92900 21419344
    113 2y3i:A (2.9) BS02 ALF 2.7.2.3 GO:0004618 ... P00558 21549713
    114 2y3i:D (2.9) BS02 ALF 2.7.2.3 GO:0004618 ... P00558 21549713
    115 2ybe:A (2.0) BS02 ALF 2.7.2.3 GO:0004618 ... P00558 21549713
    116 2zbd:A (2.4) BS03 ALF 7.2.2.10 GO:0000166 ... P04191 15448704
    117 2zbg:A (2.55) BS02 ALF 7.2.2.10 GO:0000166 ... P04191 18077416
    118 2zjy:A (2.8) BS01 ALF 3.6.5.1 GO:0000287 ... P10824 N/A
    119 3ab3:A (2.4) BS03 ALF ? GO:0001664 ... P27601 21507947
    120 3ab3:C (2.4) BS03 ALF ? GO:0001664 ... P27601 21507947
    121 3ar8:A (2.6) BS02 ALF 7.2.2.10 GO:0000166 ... P04191 21239683
    122 3b9r:A (3.0) BS01 ALF 7.2.2.10 GO:0000166 ... P04191 18075584
    123 3b9r:B (3.0) BS01 ALF 7.2.2.10 GO:0000166 ... P04191 18075584
    124 3bh7:A (1.9) BS02 ALF ? GO:0003924 ... Q9WUL7 18376416
    125 3c7k:A (2.9) BS02 ALF ? GO:0003924 ... P18872 18434540
    126 3c7k:C (2.9) BS02 ALF ? GO:0003924 ... P18872 18434540
    127 3cmt:A (3.15) BS04 ALF ? GO:0000725 ... P0A7G6 18497818
    128 3cmt:A (3.15) BS06 ALF ? GO:0000725 ... P0A7G6 18497818
    129 3cmt:A (3.15) BS08 ALF ? GO:0000725 ... P0A7G6 18497818
    130 3cmt:A (3.15) BS10 ALF ? GO:0000725 ... P0A7G6 18497818
    131 3cmt:A (3.15) BS11 ALF ? GO:0000725 ... P0A7G6 18497818
    132 3cmt:D (3.15) BS04 ALF ? GO:0000725 ... P0A7G6 18497818
    133 3cmt:D (3.15) BS06 ALF ? GO:0000725 ... P0A7G6 18497818
    134 3cmt:D (3.15) BS08 ALF ? GO:0000725 ... P0A7G6 18497818
    135 3cmt:D (3.15) BS10 ALF ? GO:0000725 ... P0A7G6 18497818
    136 3cmt:D (3.15) BS12 ALF ? GO:0000725 ... P0A7G6 18497818
    137 3cmu:A (4.2) BS02 ALF ? GO:0000725 ... P0A7G6 18497818
    138 3cmu:A (4.2) BS03 ALF ? GO:0000725 ... P0A7G6 18497818
    139 3cmu:A (4.2) BS05 ALF ? GO:0000725 ... P0A7G6 18497818
    140 3cmu:A (4.2) BS06 ALF ? GO:0000725 ... P0A7G6 18497818
    141 3cmu:A (4.2) BS07 ALF ? GO:0000725 ... P0A7G6 18497818
    142 3cmu:A (4.2) BS09 ALF ? GO:0000725 ... P0A7G6 18497818
    143 3cmw:A (2.8) BS02 ALF ? GO:0000725 ... P0A7G6 18497818
    144 3cmw:A (2.8) BS04 ALF ? GO:0000725 ... P0A7G6 18497818
    145 3cmw:A (2.8) BS05 ALF ? GO:0000725 ... P0A7G6 18497818
    146 3cmw:A (2.8) BS06 ALF ? GO:0000725 ... P0A7G6 18497818
    147 3cmw:A (2.8) BS07 ALF ? GO:0000725 ... P0A7G6 18497818
    148 3cmw:C (2.8) BS02 ALF ? GO:0000725 ... P0A7G6 18497818
    149 3cmw:C (2.8) BS03 ALF ? GO:0000725 ... P0A7G6 18497818
    150 3cmw:C (2.8) BS04 ALF ? GO:0000725 ... P0A7G6 18497818
    151 3cmw:C (2.8) BS05 ALF ? GO:0000725 ... P0A7G6 18497818
    152 3cmw:C (2.8) BS06 ALF ? GO:0000725 ... P0A7G6 18497818
    153 3cmx:A (3.4) BS04 ALF ? GO:0000725 ... P0A7G6 18497818
    154 3cmx:A (3.4) BS06 ALF ? GO:0000725 ... P0A7G6 18497818
    155 3cmx:A (3.4) BS08 ALF ? GO:0000725 ... P0A7G6 18497818
    156 3cmx:A (3.4) BS10 ALF ? GO:0000725 ... P0A7G6 18497818
    157 3cmx:A (3.4) BS12 ALF ? GO:0000725 ... P0A7G6 18497818
    158 3cmx:D (3.4) BS04 ALF ? GO:0000725 ... P0A7G6 18497818
    159 3cmx:D (3.4) BS06 ALF ? GO:0000725 ... P0A7G6 18497818
    160 3cmx:D (3.4) BS08 ALF ? GO:0000725 ... P0A7G6 18497818
    161 3cmx:D (3.4) BS10 ALF ? GO:0000725 ... P0A7G6 18497818
    162 3cmx:D (3.4) BS12 ALF ? GO:0000725 ... P0A7G6 18497818
    163 3cx7:A (2.25) BS02 ALF ? GO:0001664 ... P27601 18940608
    164 3d7m:A (2.9) BS02 ALF ? GO:0000287 ... P10824 19222191
    165 3ef0:A (2.1) BS01 ALF 3.1.3.16 GO:0004721 ... Q9P376 19026779
    166 3i62:A (1.95) BS03 ALF 3.6.4.13 GO:0003676 ... P15424 19748356
    167 3kql:A (2.5) BS02 ALF 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0004386 ... Q9WMX2 20080715
    168 3kql:B (2.5) BS02 ALF 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0004386 ... Q9WMX2 20080715
    169 3n5k:A (2.2) BS02 ALF 7.2.2.10 GO:0000166 ... P04191 23400778
    170 3n5k:B (2.2) BS02 ALF 7.2.2.10 GO:0000166 ... P04191 23400778
    171 3puw:A (2.3) BS03 ALF 7.5.2.1 GO:0005515 ... P68187 21825153
    172 3puw:A (2.3) BS05 ALF 7.5.2.1 GO:0005515 ... P68187 21825153
    173 3puw:B (2.3) BS02 ALF 7.5.2.1 GO:0005515 ... P68187 21825153
    174 3puw:B (2.3) BS05 ALF 7.5.2.1 GO:0005515 ... P68187 21825153
    175 3qpw:A (2.25) BS01 ALF 2.7.1.105
    3.1.3.46    		 GO:0003824 ... Q16875 22275052
    176 3rfu:A (3.2) BS01 ALF 7.2.2.8 GO:0000166 ... Q5ZWR1 21716286
    177 3rfu:B (3.2) BS01 ALF 7.2.2.8 GO:0000166 ... Q5ZWR1 21716286
    178 3rfu:C (3.2) BS01 ALF 7.2.2.8 GO:0000166 ... Q5ZWR1 21716286
    179 3rfu:D (3.2) BS01 ALF 7.2.2.8 GO:0000166 ... Q5ZWR1 21716286
    180 3sr0:A (1.565) BS03 ALF 2.7.4.3 GO:0004017 ... O66490 25580578
    181 3sr0:B (1.565) BS03 ALF 2.7.4.3 GO:0004017 ... O66490 25580578
    182 3ss8:A (2.51) BS04 ALF ? GO:0005525 ... Q5M586 21858085
    183 3ss8:B (2.51) BS04 ALF ? GO:0005525 ... Q5M586 21858085
    184 3t12:A (2.2) BS03 ALF 3.6.5.2 GO:0003924 ... Q5SJ82 21847100
    185 3t34:A (2.405) BS02 ALF 3.6.5.- GO:0003924 ... P42697 22107825
    186 3t34:B (2.405) BS02 ALF 3.6.5.- GO:0003924 ... P42697 22107825
    187 3w6p:A (1.7) BS02 ALF 3.6.5.5 GO:0003924 ... O00429 N/A
    188 3w6p:B (1.7) BS02 ALF 3.6.5.5 GO:0003924 ... O00429 N/A
    189 3wgu:A (2.8) BS01 ALF 7.2.2.13 GO:0000166 ... P05024 N/A
    190 3wgu:C (2.8) BS01 ALF 7.2.2.13 GO:0000166 ... P05024 N/A
    191 3wgv:A (2.8) BS01 ALF 7.2.2.13 GO:0000166 ... P05024 N/A
    192 3wgv:C (2.8) BS01 ALF 7.2.2.13 GO:0000166 ... P05024 N/A
    193 3zq6:A (2.107) BS02 ALF 7.3.2.7 GO:0005524 ... O27555 21658170
    194 3zq6:A (2.107) BS05 ALF 7.3.2.7 GO:0005524 ... O27555 21658170
    195 3zq6:B (2.107) BS02 ALF 7.3.2.7 GO:0005524 ... O27555 21658170
    196 3zq6:B (2.107) BS05 ALF 7.3.2.7 GO:0005524 ... O27555 21658170
    197 3zq6:C (2.107) BS02 ALF 7.3.2.7 GO:0005524 ... O27555 21658170
    198 3zq6:C (2.107) BS04 ALF 7.3.2.7 GO:0005524 ... O27555 21658170
    199 3zq6:D (2.107) BS02 ALF 7.3.2.7 GO:0005524 ... O27555 21658170
    200 3zq6:D (2.107) BS04 ALF 7.3.2.7 GO:0005524 ... O27555 21658170
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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