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BioLiP
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1cpu:A (2.0) BS02 AGL 3.2.1.1 GO:0003824 ... P04746 10769135
    2 1mfu:A (2.0) BS03 AGL 3.2.1.1 GO:0003824 ... P0DUB6 12527308
    3 1mfu:A (2.0) BS05 AGL 3.2.1.1 GO:0003824 ... P0DUB6 12527308
    4 1mfu:A (2.0) BS08 AGL 3.2.1.1 GO:0003824 ... P0DUB6 12527308
    5 1mfv:A (2.0) BS02 AGL 3.2.1.1 GO:0003824 ... P0DUB6 12527308
    6 1mfv:A (2.0) BS04 AGL 3.2.1.1 GO:0003824 ... P0DUB6 12527308
    7 1mfv:A (2.0) BS06 AGL 3.2.1.1 GO:0003824 ... P0DUB6 12527308
    8 1nm9:A (2.1) BS02 AGL 3.2.1.1 GO:0003824 ... P0DUB6 15182367
    9 1nm9:A (2.1) BS04 AGL 3.2.1.1 GO:0003824 ... P0DUB6 15182367
    10 1pig:A (2.2) BS02 AGL 3.2.1.1 GO:0003824 ... P00690 8757803 PDBbind: -logKd/Ki=9.15, IC50=0.7nM
    11 1pig:A (2.2) BS04 AGL 3.2.1.1 GO:0003824 ... P00690 8757803 PDBbind: -logKd/Ki=9.15, IC50=0.7nM
    12 1qho:A (1.7) BS07 AGL 3.2.1.133 GO:0003824 ... P19531 10387084
    13 1z32:X (1.6) BS02 AGL 3.2.1.1 GO:0003824 ... P0DUB6 N/A
    14 3blk:A (2.0) BS03 AGL 3.2.1.1 GO:0003824 ... P0DUB6 N/A
    15 3blp:X (1.6) BS03 AGL 3.2.1.1 GO:0003824 ... P0DUB6 N/A
    16 3dhp:A (1.5) BS02 AGL 3.2.1.1 GO:0003824 ... P0DUB6 N/A
    17 5csu:A (2.53) BS02 AGL 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    18 5csu:A (2.53) BS05 AGL 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    19 5csu:B (2.53) BS02 AGL 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    20 5csu:B (2.53) BS05 AGL 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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