Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 464 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 3 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 7zd0:D (1.87) BS03 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    402 7zd1:A (1.56) BS02 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    403 7zd1:B (1.56) BS02 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    404 7zd1:C (1.56) BS03 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    405 7zd1:D (1.56) BS03 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    406 7zd2:A (2.16) BS02 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    407 7zd2:B (2.16) BS02 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    408 7zd2:C (2.16) BS03 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    409 7zd2:D (2.16) BS03 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    410 7zd3:A (1.9) BS02 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    411 7zd3:B (1.9) BS02 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    412 7zd3:C (1.9) BS03 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    413 7zd3:D (1.9) BS03 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    414 7zd4:A (2.14) BS02 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    415 7zd4:B (2.14) BS02 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    416 7zd4:C (2.14) BS03 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    417 7zd4:D (2.14) BS03 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    418 7zd7:A (1.9) BS02 ADN 3.13.2.1 GO:0004013 ... P74008 35775986
    419 7zd7:C (1.9) BS02 ADN 3.13.2.1 GO:0004013 ... P74008 35775986
    420 7zd8:A (2.03) BS02 ADN 3.13.2.1 GO:0004013 ... P74008 35775986
    421 7zd8:C (2.03) BS02 ADN 3.13.2.1 GO:0004013 ... P74008 35775986
    422 7zd9:A (1.89) BS02 ADN 3.13.2.1 GO:0004013 ... P74008 35775986
    423 7zd9:C (1.89) BS02 ADN 3.13.2.1 GO:0004013 ... P74008 35775986
    424 8ajs:AAA (1.68) BS02 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    425 8ajs:BBB (1.68) BS02 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    426 8ajs:CCC (1.68) BS03 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    427 8ajs:DDD (1.68) BS03 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    428 8ajt:AAA (1.499) BS01 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    429 8ajt:BBB (1.499) BS01 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    430 8ajt:CCC (1.499) BS03 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    431 8ajt:DDD (1.499) BS02 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    432 8aju:AAA (1.645) BS02 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    433 8aju:CCC (1.645) BS01 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    434 8ajw:AAA (1.819) BS02 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    435 8ajw:BBB (1.819) BS02 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    436 8ajw:CCC (1.819) BS03 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    437 8ajw:DDD (1.819) BS03 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    438 8axz:A (1.154) BS03 ADN 2.5.1.6 GO:0004478 ... P31153 N/A
    439 8azf:A (1.41) BS02 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    440 8azf:C (1.41) BS02 ADN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    441 8bzv:A (1.8) BS01 ADN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    442 8c4m:A (1.51) BS01 ADN 2.7.7.85 GO:0004016 ... Q8Y5E4 37223749
    443 8g1u:A (2.83) BS03 ADN 2.1.1.320 GO:0000387 ... O14744 37562960
    444 8g1u:E (2.83) BS03 ADN 2.1.1.320 GO:0000387 ... O14744 37562960
    445 8g1u:I (2.83) BS03 ADN 2.1.1.320 GO:0000387 ... O14744 37562960
    446 8g1u:M (2.83) BS03 ADN 2.1.1.320 GO:0000387 ... O14744 37562960
    447 8hdp:R (3.2) BS01 ADN ? GO:0001609 ... P29275 36575181
    448 8jzg:A (2.39) BS01 ADN 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    449 8jzg:B (2.39) BS03 ADN 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    450 8jzg:C (2.39) BS02 ADN 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    451 8jzg:D (2.39) BS04 ADN 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    452 8pyx:A (2.02) BS01 ADN ? N/A A0A1M5ABR5 38269041
    453 8pyx:B (2.02) BS01 ADN ? N/A A0A1M5ABR5 38269041
    454 8ser:A (3.42) BS01 ADN ? GO:0003151 ... P11716 37192614
    455 8ser:B (3.42) BS01 ADN ? GO:0003151 ... P11716 37192614
    456 8ser:C (3.42) BS01 ADN ? GO:0003151 ... P11716 37192614
    457 8ser:D (3.42) BS01 ADN ? GO:0003151 ... P11716 37192614
    458 8sey:A (2.99) BS01 ADN ? GO:0003151 ... P11716 37192614
    459 8sey:B (2.99) BS01 ADN ? GO:0003151 ... P11716 37192614
    460 8sey:C (2.99) BS01 ADN ? GO:0003151 ... P11716 37192614
    461 8sey:D (2.99) BS01 ADN ? GO:0003151 ... P11716 37192614
    462 8wm0:A (2.8) BS02 ADN 2.7.11.1 GO:0004672 ... Q9UKE5 38491946
    463 8x41:A (2.35) BS02 ADN N/A N/A O59487 39146930
    464 8x41:B (2.35) BS02 ADN N/A N/A O59487 39146930
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218