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BioLiP
Download all results in tab-seperated text for 704 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 7lz7:F (2.8) BS01 ACP N/A GO:0036211 ... N/A 34406768
    602 7lz8:F (2.92) BS01 ACP N/A GO:0036211 ... N/A 34406768
    603 7nnl:B (3.1) BS02 ACP 7.2.2.6 GO:0000287 ... P03960 34429416
    604 7nnp:B (3.2) BS02 ACP 7.2.2.6 GO:0000166 ... P03960 34429416
    605 7ogn:F (2.2) BS01 ACP N/A GO:0036211 ... N/A 35408808
    606 7oh7:A (3.8) BS02 ACP 7.6.2.1 GO:0000166 ... P39524 34023399
    607 7oxy:A (1.65) BS05 ACP 3.4.-.- GO:0005524 ... A0LU48 34789727
    608 7rd8:A (5.64) BS01 ACP 7.6.2.1 GO:0000139 ... P40527 34645814
    609 7ssi:A (3.41) BS01 ACP 2.7.13.3 GO:0000155 ... O34757 36693130
    610 7ssi:B (3.41) BS01 ACP 2.7.13.3 GO:0000155 ... O34757 36693130
    611 7ssi:D (3.41) BS01 ACP 2.7.13.3 GO:0000155 ... O34757 36693130
    612 7ssi:E (3.41) BS01 ACP 2.7.13.3 GO:0000155 ... O34757 36693130
    613 7ssj:A (2.52) BS01 ACP 2.7.13.3 GO:0000155 ... O34757 36693130
    614 7ssj:C (2.52) BS01 ACP 2.7.13.3 GO:0000155 ... O34757 36693130
    615 7ssj:D (2.52) BS01 ACP 2.7.13.3 GO:0000155 ... O34757 36693130
    616 7tdg:A (3.8) BS03 ACP ? GO:0003151 ... P11716 35257661
    617 7tdg:B (3.8) BS03 ACP ? GO:0003151 ... P11716 35257661
    618 7tdg:C (3.8) BS03 ACP ? GO:0003151 ... P11716 35257661
    619 7tdg:D (3.8) BS03 ACP ? GO:0003151 ... P11716 35257661
    620 7tdh:A (4.0) BS03 ACP ? GO:0003151 ... P11716 35257661
    621 7tdh:B (4.0) BS03 ACP ? GO:0003151 ... P11716 35257661
    622 7tdh:C (4.0) BS03 ACP ? GO:0003151 ... P11716 35257661
    623 7tdh:D (4.0) BS03 ACP ? GO:0003151 ... P11716 35257661
    624 7tdi:B (3.3) BS01 ACP ? GO:0003151 ... P11716 35257661
    625 7tdi:C (3.3) BS01 ACP ? GO:0003151 ... P11716 35257661
    626 7tdi:D (3.3) BS01 ACP ? GO:0003151 ... P11716 35257661
    627 7tdj:A (3.7) BS01 ACP ? GO:0003151 ... P11716 35257661
    628 7tdj:B (3.7) BS01 ACP ? GO:0003151 ... P11716 35257661
    629 7tdj:C (3.7) BS01 ACP ? GO:0003151 ... P11716 35257661
    630 7tdj:D (3.7) BS01 ACP ? GO:0003151 ... P11716 35257661
    631 7tdk:A (3.8) BS01 ACP ? GO:0003151 ... P11716 35257661
    632 7tdk:B (3.8) BS01 ACP ? GO:0003151 ... P11716 35257661
    633 7tdk:C (3.8) BS01 ACP ? GO:0003151 ... P11716 35257661
    634 7tdk:D (3.8) BS01 ACP ? GO:0003151 ... P11716 35257661
    635 7umz:A (3.09) BS01 ACP N/A GO:0005216 ... N/A N/A
    636 7umz:B (3.09) BS01 ACP N/A GO:0005216 ... N/A N/A
    637 7umz:C (3.09) BS01 ACP N/A GO:0005216 ... N/A N/A
    638 7umz:D (3.09) BS02 ACP N/A GO:0005216 ... N/A N/A
    639 7vmk:F (2.5) BS01 ACP N/A GO:0036211 ... N/A N/A
    640 7vpi:A (3.6) BS01 ACP 7.6.2.- GO:0000166 ... Q9NQ11 34798056
    641 7wcf:A (1.3636) BS01 ACP ? GO:0004674 ... Q5ZSZ6 35882877
    642 7whw:A (3.1) BS01 ACP 7.6.2.1 GO:0000166 ... P32660 35294892
    643 7wiz:A (3.2) BS02 ACP 6.3.4.2 GO:0003883 ... Q9VUL1 34301892
    644 7wiz:B (3.2) BS04 ACP 6.3.4.2 GO:0003883 ... Q9VUL1 34301892
    645 7wiz:C (3.2) BS02 ACP 6.3.4.2 GO:0003883 ... Q9VUL1 34301892
    646 7wiz:D (3.2) BS04 ACP 6.3.4.2 GO:0003883 ... Q9VUL1 34301892
    647 7x23:A (3.2) BS01 ACP 7.2.2.13
    7.2.2.19    		 GO:0000166 ... P54708 36085139
    648 7yag:A (3.1) BS01 ACP 7.2.2.10 GO:0000139 ... P98194 36867705
    649 7yah:A (3.12) BS01 ACP 7.2.2.10 GO:0000139 ... P98194 36867705
    650 7yai:A (3.14) BS01 ACP 7.2.2.10 GO:0000139 ... P98194 36867705
    651 7yaj:A (3.16) BS01 ACP 7.2.2.10 GO:0000139 ... P98194 36867705
    652 7z2n:F (2.17) BS01 ACP N/A GO:0036211 ... N/A 35939994
    653 7z2p:F (2.0) BS01 ACP N/A GO:0036211 ... N/A 35939994
    654 7z67:A (2.65) BS01 ACP 3.6.1.1 GO:0005524 ... Q9C9B9 N/A
    655 7z7d:F (2.0) BS01 ACP N/A GO:0036211 ... N/A 35404502
    656 7zx2:F (2.5) BS01 ACP N/A GO:0036211 ... N/A 36462501
    657 7zyw:F (2.45) BS01 ACP 6.3.2.25 GO:0036211 ... A0A8V0Z8P0 38294341
    658 8a0l:F (1.9981) BS01 ACP N/A GO:0036211 ... N/A 36462501
    659 8a9t:F (2.304) BS01 ACP N/A GO:0036211 ... N/A 36242921
    660 8a9z:F (2.294) BS01 ACP N/A GO:0036211 ... N/A 36242921
    661 8ahm:F (2.42) BS01 ACP N/A GO:0036211 ... N/A 36281761
    662 8asn:F (2.571) BS01 ACP 6.3.2.25 GO:0000226 ... Q8NG68 N/A
    663 8asn:G (2.571) BS01 ACP 6.3.2.25 GO:0000226 ... Q8NG68 N/A
    664 8asn:H (2.571) BS01 ACP 6.3.2.25 GO:0000226 ... Q8NG68 N/A
    665 8asn:I (2.571) BS01 ACP 6.3.2.25 GO:0000226 ... Q8NG68 N/A
    666 8b7a:F (2.25) BS01 ACP 6.3.2.25 GO:0036211 ... A0A8V0Z8P0 36468686
    667 8b7b:F (2.25) BS01 ACP 6.3.2.25 GO:0036211 ... A0A8V0Z8P0 36468686
    668 8b7c:F (1.9) BS01 ACP 6.3.2.25 GO:0036211 ... A0A8V0Z8P0 36468686
    669 8bde:F (1.902) BS02 ACP N/A GO:0036211 ... N/A 36876916
    670 8bdf:F (1.95) BS01 ACP N/A GO:0036211 ... N/A 36876916
    671 8c0f:F (2.1005) BS01 ACP N/A GO:0036211 ... N/A 34315764
    672 8clb:F (3.0) BS01 ACP 6.3.2.25 GO:0036211 ... A0A8V0Z8P0 38042952
    673 8clc:F (2.7) BS01 ACP 6.3.2.25 GO:0036211 ... A0A8V0Z8P0 38042952
    674 8cld:F (3.2) BS01 ACP 6.3.2.25 GO:0036211 ... A0A8V0Z8P0 38042952
    675 8clf:F (2.7) BS01 ACP 6.3.2.25 GO:0036211 ... A0A8V0Z8P0 38042952
    676 8clg:F (2.8) BS01 ACP 6.3.2.25 GO:0036211 ... A0A8V0Z8P0 38042952
    677 8clh:F (2.5) BS01 ACP 6.3.2.25 GO:0036211 ... A0A8V0Z8P0 38042952
    678 8d3w:A (3.5) BS01 ACP 7.2.2.13 GO:0000166 ... P13637 36075933
    679 8diq:F (2.395) BS01 ACP N/A GO:0036211 ... N/A 36596380
    680 8fxi:D (2.7) BS03 ACP ? GO:0003824 ... A0A140K0M0 37222490
    681 8huh:F (2.8) BS01 ACP 6.3.2.25 GO:0036211 ... A0A8V0Z8P0 N/A
    682 8ijm:A (3.13) BS01 ACP 7.2.2.13
    7.2.2.19    		 GO:0000166 ... P54708 37482134
    683 8iwr:A (3.52) BS02 ACP 7.2.2.10 GO:0000139 ... P98194 37258749
    684 8jjb:F (2.68) BS01 ACP 6.3.2.25 GO:0036211 ... A0A8V0Z8P0 38430854
    685 8jjc:F (2.76) BS01 ACP 6.3.2.25 GO:0036211 ... A0A8V0Z8P0 38430854
    686 8oqx:A (2.12) BS01 ACP ? N/A G8UQH9 37481208
    687 8oqx:B (2.12) BS01 ACP ? N/A G8UQH9 37481208
    688 8ox4:A (3.4) BS01 ACP 7.6.2.1 GO:0000166 ... O43520 37980352
    689 8p53:A (2.7) BS01 ACP ? GO:0005524 ... G3XD64 38051770
    690 8p53:A (2.7) BS02 ACP ? GO:0005524 ... G3XD64 38051770
    691 8p53:B (2.7) BS01 ACP ? GO:0005524 ... G3XD64 38051770
    692 8p53:B (2.7) BS02 ACP ? GO:0005524 ... G3XD64 38051770
    693 8pb9:A (3.3) BS01 ACP ? GO:0005524 ... G3XD64 38051770
    694 8pb9:A (3.3) BS02 ACP ? GO:0005524 ... G3XD64 38051770
    695 8pb9:B (3.3) BS01 ACP ? GO:0005524 ... G3XD64 38051770
    696 8r67:F (2.2) BS01 ACP 6.3.2.25 GO:0046872 ... A0A8V0Z8P0 38735475
    697 8riv:F (2.78) BS01 ACP 6.3.2.25 GO:0036211 ... A0A8V0Z8P0 38487227
    698 8riw:F (2.57) BS01 ACP 6.3.2.25 GO:0036211 ... A0A8V0Z8P0 38487227
    699 8wd0:F (2.6) BS01 ACP N/A GO:0046872 ... A0A8V0Z8P0 38905886
    700 8yle:A (1.86) BS01 ACP 3.1.-.-
    5.6.2.4    		 GO:0003676 ... Q14191 N/A
    701 8ytx:F (2.53) BS01 ACP 6.3.2.25 GO:0046872 ... A0A8V0Z8P0 N/A
    702 8yu9:F (3.25) BS01 ACP 6.3.2.25 GO:0046872 ... A0A8V0Z8P0 N/A
    703 8yua:F (2.37) BS01 ACP 6.3.2.25 GO:0046872 ... A0A8V0Z8P0 N/A
    704 8zb8:F (2.94) BS01 ACP N/A GO:0046872 ... A0A8V0Z8P0 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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