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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 704 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 5s5u:F (2.5) BS01 ACP N/A GO:0036211 ... N/A 33951246
    402 5s5v:F (2.7) BS01 ACP N/A GO:0036211 ... N/A 33951246
    403 5s5w:F (2.35) BS01 ACP N/A GO:0036211 ... N/A 33951246
    404 5s5x:F (2.32) BS01 ACP N/A GO:0036211 ... N/A 33951246
    405 5s5y:F (2.26) BS01 ACP N/A GO:0036211 ... N/A 33951246
    406 5s5z:F (2.55) BS01 ACP N/A GO:0036211 ... N/A 33951246
    407 5s60:F (2.3) BS01 ACP N/A GO:0036211 ... N/A 33951246
    408 5s61:F (1.95) BS01 ACP N/A GO:0036211 ... N/A 33951246
    409 5s62:F (2.75) BS01 ACP N/A GO:0036211 ... N/A 33951246
    410 5s63:F (2.6) BS01 ACP N/A GO:0036211 ... N/A 33951246
    411 5s64:F (2.75) BS01 ACP N/A GO:0036211 ... N/A 33951246
    412 5s65:F (2.25) BS01 ACP N/A GO:0036211 ... N/A 33951246
    413 5s66:F (2.1) BS01 ACP N/A GO:0036211 ... N/A 33951246
    414 5s67:F (2.1) BS01 ACP N/A GO:0036211 ... N/A 33951246
    415 5sb3:F (2.2) BS01 ACP N/A GO:0036211 ... N/A 35404502
    416 5sb4:F (2.5) BS01 ACP N/A GO:0036211 ... N/A 35404502
    417 5sb5:F (2.31) BS01 ACP N/A GO:0036211 ... N/A 35404502
    418 5sb6:F (2.3) BS01 ACP N/A GO:0036211 ... N/A 35404502
    419 5sb7:F (2.1) BS01 ACP N/A GO:0036211 ... N/A 35404502
    420 5sb8:F (2.3) BS01 ACP N/A GO:0036211 ... N/A 34788896
    421 5sb9:F (2.5) BS01 ACP N/A GO:0036211 ... N/A 34788896
    422 5sba:F (2.25) BS01 ACP N/A GO:0036211 ... N/A 34788896
    423 5sbb:F (2.25) BS01 ACP N/A GO:0036211 ... N/A 34788896
    424 5sbc:F (2.32) BS01 ACP N/A GO:0036211 ... N/A 34788896
    425 5sbd:F (2.25) BS01 ACP N/A GO:0036211 ... N/A 34788896
    426 5sbe:F (2.75) BS01 ACP N/A GO:0036211 ... N/A 34788896
    427 5ugx:A (2.349) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 28166054
    428 5ugx:B (2.349) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 28166054
    429 5uhn:A (2.909) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 28166054
    430 5uhn:B (2.909) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 28166054
    431 5ui0:B (2.05) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 28166054
    432 5v60:A (2.18) BS01 ACP 2.7.11.24 GO:0000165 ... P28482 28740606
    433 5x1s:A (1.45) BS01 ACP ? GO:0004672 ... A0A1S4NYE5 29858276
    434 5x40:A (1.45) BS02 ACP 7.2.2.- GO:0005524 ... O68106 28322252
    435 5x40:A (1.45) BS03 ACP 7.2.2.- GO:0005524 ... O68106 28322252
    436 5x40:B (1.45) BS01 ACP 7.2.2.- GO:0005524 ... O68106 28322252
    437 5x40:B (1.45) BS03 ACP 7.2.2.- GO:0005524 ... O68106 28322252
    438 5x8c:A (2.07) BS06 ACP 2.7.4.9 GO:0004798 ... Q5SHX3 29652261
    439 5xaf:F (2.551) BS02 ACP N/A GO:0036211 ... N/A 29306206
    440 5xag:F (2.56) BS02 ACP N/A GO:0036211 ... N/A 29306206
    441 5xhc:F (2.75) BS01 ACP N/A GO:0036211 ... N/A N/A
    442 5xi5:F (2.81) BS01 ACP N/A GO:0036211 ... N/A N/A
    443 5xi7:F (2.99) BS01 ACP N/A GO:0036211 ... N/A N/A
    444 5xlt:F (2.813) BS01 ACP N/A GO:0036211 ... N/A 28864414
    445 5xlz:F (2.298) BS01 ACP N/A GO:0036211 ... N/A 29102632
    446 5xp3:F (2.3) BS01 ACP N/A GO:0036211 ... N/A 29691282
    447 5yl2:F (2.09) BS01 ACP N/A GO:0036211 ... N/A 29691282
    448 5yl4:F (2.64) BS01 ACP N/A GO:0036211 ... N/A N/A
    449 5ylj:F (2.7) BS01 ACP N/A GO:0036211 ... N/A 29691282
    450 5yls:F (3.0) BS01 ACP N/A GO:0036211 ... N/A 29691282
    451 5yz3:F (2.545) BS01 ACP N/A GO:0036211 ... N/A 30135190
    452 5z4p:F (2.5) BS01 ACP N/A GO:0036211 ... N/A N/A
    453 5z4u:F (3.18) BS01 ACP N/A GO:0036211 ... N/A N/A
    454 5ztf:A (3.45) BS01 ACP 7.2.2.10 GO:0000045 ... P16615 31018135
    455 5zxh:F (2.8) BS01 ACP N/A GO:0036211 ... N/A N/A
    456 6a8b:A (2.01) BS01 ACP 2.7.1.15 GO:0004747 ... A0A3S7X0F5 31170491
    457 6a8b:B (2.01) BS02 ACP 2.7.1.15 GO:0004747 ... A0A3S7X0F5 31170491
    458 6agg:Z (2.706) BS01 ACP 6.3.4.22 GO:0002101 ... O28025 30121296
    459 6agk:F (2.8) BS01 ACP N/A GO:0036211 ... N/A 31860298
    460 6br1:F (2.304) BS01 ACP N/A GO:0036211 ... N/A 29406710
    461 6brf:F (2.5) BS01 ACP N/A GO:0036211 ... N/A 29406710
    462 6bry:F (2.7) BS01 ACP N/A GO:0036211 ... N/A 29406710
    463 6bs2:F (2.65) BS01 ACP N/A GO:0036211 ... N/A 29406710
    464 6c83:A (2.55) BS01 ACP 2.7.11.1 GO:0000212 ... O14965 31239342
    465 6c83:B (2.55) BS01 ACP 2.7.11.1 GO:0000212 ... O14965 31239342
    466 6ci7:A (2.3) BS01 ACP ? GO:0000166 ... Q8TZ25 29507203
    467 6ci7:B (2.3) BS01 ACP ? GO:0000166 ... Q8TZ25 29507203
    468 6ci7:C (2.3) BS01 ACP ? GO:0000166 ... Q8TZ25 29507203
    469 6ci7:D (2.3) BS01 ACP ? GO:0000166 ... Q8TZ25 29507203
    470 6ci7:E (2.3) BS01 ACP ? GO:0000166 ... Q8TZ25 29507203
    471 6ci7:F (2.3) BS01 ACP ? GO:0000166 ... Q8TZ25 29507203
    472 6cpf:A (2.3) BS01 ACP 2.7.11.1 GO:0000212 ... O14965 29901437
    473 6d88:F (2.853) BS01 ACP N/A GO:0036211 ... N/A 30122035
    474 6e2u:A (2.05) BS02 ACP 4.1.1.33 GO:0004163 ... Q9FD68 32769976
    475 6eg5:F (2.45) BS01 ACP N/A GO:0036211 ... N/A N/A
    476 6eq9:A (1.83) BS01 ACP 2.7.11.24 GO:0004672 ... P53779 30087925
    477 6eq9:B (1.83) BS02 ACP 2.7.11.24 GO:0004672 ... P53779 30087925
    478 6eqo:A (2.7) BS01 ACP 1.1.1.35
    6.2.1.1    		 GO:0003824 ... A3WE14 30374166
    479 6eqo:B (2.7) BS01 ACP 1.1.1.35
    6.2.1.1    		 GO:0003824 ... A3WE14 30374166
    480 6f7c:F (2.002) BS01 ACP N/A GO:0036211 ... N/A 31655259
    481 6fii:F (2.405) BS01 ACP N/A GO:0036211 ... N/A 29844393
    482 6fjf:F (2.402) BS01 ACP N/A GO:0036211 ... N/A 29844393
    483 6fjm:F (2.1) BS01 ACP N/A GO:0036211 ... N/A 29844393
    484 6fkj:F (2.148) BS02 ACP N/A GO:0036211 ... N/A 29523799
    485 6fkl:F (2.098) BS02 ACP N/A GO:0036211 ... N/A 29523799
    486 6gf3:F (2.4) BS01 ACP N/A GO:0036211 ... N/A 30006510
    487 6gj4:F (2.4) BS01 ACP N/A GO:0036211 ... N/A 30448418
    488 6gze:F (2.49) BS01 ACP N/A GO:0036211 ... N/A 32151315
    489 6hef:A (3.538) BS01 ACP 7.2.2.10 GO:0000166 ... P04191 30605135
    490 6hx8:F (2.402) BS01 ACP N/A GO:0036211 ... N/A 30775645
    491 6hxb:A (4.0) BS04 ACP 7.2.2.10 GO:0000045 ... P11607 30777856
    492 6i2p:A (2.37) BS02 ACP 2.7.11.1 GO:0004672 ... P9WI81 31064884
    493 6i2p:B (2.37) BS01 ACP 2.7.11.1 GO:0004672 ... P9WI81 31064884
    494 6i5c:F (2.95) BS01 ACP N/A GO:0036211 ... N/A 31098019
    495 6jcj:F (2.5) BS01 ACP N/A GO:0036211 ... N/A 30803758
    496 6jju:A (3.2) BS01 ACP 7.2.2.10 GO:0000045 ... P16615 31018135
    497 6k7i:A (3.22) BS01 ACP 7.6.2.1 GO:0000166 ... Q9Y2Q0 31416931
    498 6k7j:A (3.08) BS01 ACP 7.6.2.1 GO:0000166 ... Q9Y2Q0 31416931
    499 6k9v:F (2.543) BS01 ACP N/A GO:0036211 ... N/A 31369682
    500 6knz:F (2.475) BS02 ACP N/A GO:0036211 ... N/A 31628188
    501 6lcr:A (3.4) BS01 ACP 7.6.2.1 GO:0000166 ... G0S196 32303992
    502 6lle:A (2.9) BS01 ACP 7.2.2.10 GO:0000045 ... P16615 32851169
    503 6ln5:A (2.8) BS01 ACP 7.2.2.10 GO:0000045 ... P16615 32851169
    504 6ln6:A (2.9) BS01 ACP 7.2.2.10 GO:0000045 ... P16615 32851169
    505 6ln7:A (2.8) BS01 ACP 7.2.2.10 GO:0000045 ... P16615 32851169
    506 6lsm:F (2.751) BS01 ACP N/A GO:0036211 ... N/A N/A
    507 6lsn:F (2.445) BS01 ACP N/A GO:0036211 ... N/A N/A
    508 6lzj:A (1.72836) BS01 ACP ? GO:0005524 ... O67518 32571878
    509 6n47:F (2.6) BS01 ACP N/A GO:0036211 ... N/A 31714738
    510 6nng:F (2.397) BS01 ACP N/A GO:0036211 ... N/A 31043459
    511 6o5m:F (2.3) BS01 ACP N/A GO:0036211 ... N/A 31251599
    512 6o61:F (2.599) BS01 ACP N/A GO:0036211 ... N/A 31251599
    513 6ph4:B (3.25) BS03 ACP 2.7.13.3 GO:0004673 ... Q8YC53 33879593
    514 6pnx:A (2.199) BS01 ACP 2.7.10.1 GO:0004672 ... P22607 31959966
    515 6pnx:B (2.199) BS01 ACP 2.7.10.1 GO:0004672 ... P22607 31959966
    516 6qqn:F (2.301) BS01 ACP N/A GO:0036211 ... N/A 31302152
    517 6qtn:F (1.9) BS01 ACP N/A GO:0036211 ... N/A 30897704
    518 6rb2:A (3.20001) BS03 ACP 7.2.2.10 GO:0000166 ... P04191 33229570
    519 6ru6:A (2.05) BS02 ACP 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P48730 32719556
    520 6ru6:B (2.05) BS01 ACP 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P48730 32719556
    521 6s83:B (2.336) BS04 ACP 2.5.1.6 GO:0000287 ... Q8TZW1 31962159
    522 6s83:D (2.336) BS03 ACP 2.5.1.6 GO:0000287 ... Q8TZW1 31962159
    523 6s83:F (2.336) BS04 ACP 2.5.1.6 GO:0000287 ... Q8TZW1 31962159
    524 6s83:H (2.336) BS03 ACP 2.5.1.6 GO:0000287 ... Q8TZW1 31962159
    525 6s9e:F (2.25) BS01 ACP N/A GO:0036211 ... N/A 32151315
    526 6ses:F (2.0) BS01 ACP N/A GO:0036211 ... N/A 32591477
    527 6tnh:A (2.21) BS02 ACP 6.3.4.25 GO:0000166 ... G3FFN6 33926955
    528 6tnh:B (2.21) BS02 ACP 6.3.4.25 GO:0000166 ... G3FFN6 33926955
    529 6u2g:A (2.886) BS01 ACP 2.7.12.2 GO:0000165 ... Q02750 31988522
    530 6u2g:B (2.886) BS02 ACP 2.7.11.1 GO:0004672 ... P15056 31988522
    531 6v6q:A (2.46) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 N/A
    532 6v6q:B (2.46) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 N/A
    533 6v6q:C (2.46) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 N/A
    534 6v6q:D (2.46) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 N/A
    535 6wk0:A (2.0) BS01 ACP 2.7.1.15 GO:0004747 ... Q9H477 N/A
    536 6wk0:B (2.0) BS02 ACP 2.7.1.15 GO:0004747 ... Q9H477 N/A
    537 6wk0:C (2.0) BS02 ACP 2.7.1.15 GO:0004747 ... Q9H477 N/A
    538 6wk0:D (2.0) BS01 ACP 2.7.1.15 GO:0004747 ... Q9H477 N/A
    539 6x1c:F (2.9) BS01 ACP N/A GO:0036211 ... N/A 34406768
    540 6x1e:F (2.9) BS01 ACP N/A GO:0036211 ... N/A 34406768
    541 6x1f:F (2.7) BS01 ACP N/A GO:0036211 ... N/A 34406768
    542 6xmq:A (3.7) BS01 ACP 7.4.2.- GO:0000166 ... P39986 32973005
    543 6y4m:F (3.34) BS01 ACP N/A GO:0036211 ... N/A 33544599
    544 6y4n:F (2.852) BS01 ACP N/A GO:0036211 ... N/A 33544599
    545 6y6d:F (2.2) BS01 ACP N/A GO:0036211 ... N/A 32657585
    546 7au5:F (2.2) BS01 ACP N/A GO:0036211 ... N/A 34159741
    547 7bsp:A (4.0) BS01 ACP 7.6.2.1 GO:0000166 ... Q8NB49 32997992
    548 7cda:F (2.659) BS01 ACP N/A GO:0036211 ... N/A 35762925
    549 7ce6:F (2.695) BS01 ACP N/A GO:0036211 ... N/A 35762925
    550 7ce8:F (2.725) BS01 ACP N/A GO:0036211 ... N/A 35762925
    551 7cek:F (2.696) BS01 ACP N/A GO:0036211 ... N/A 35762925
    552 7cld:F (2.611) BS01 ACP N/A GO:0036211 ... N/A 34138737
    553 7cnm:F (2.44) BS01 ACP N/A GO:0036211 ... N/A 33220079
    554 7cno:G (2.5) BS01 ACP N/A GO:0036211 ... N/A 33220079
    555 7cqn:A (1.962) BS01 ACP 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    556 7cqn:A (1.962) BS02 ACP 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    557 7cqn:B (1.962) BS01 ACP 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    558 7cqn:C (1.962) BS01 ACP 6.3.1.2 GO:0000166 ... A0A369R1N0 33199371
    559 7dad:F (2.85) BS01 ACP N/A GO:0036211 ... N/A 33272565
    560 7dae:F (2.394) BS01 ACP N/A GO:0036211 ... N/A 33272565
    561 7daf:F (2.4) BS01 ACP N/A GO:0036211 ... N/A 33272565
    562 7db9:F (2.845) BS01 ACP N/A GO:0036211 ... N/A N/A
    563 7dbb:F (2.805) BS01 ACP N/A GO:0036211 ... N/A N/A
    564 7dbc:F (2.4) BS01 ACP N/A GO:0036211 ... N/A N/A
    565 7dbd:F (3.094) BS01 ACP N/A GO:0036211 ... N/A N/A
    566 7dp8:F (2.446) BS01 ACP N/A GO:0036211 ... N/A 34138737
    567 7dsh:A (3.67) BS01 ACP 7.6.2.1 GO:0000166 ... P32660 35294892
    568 7dsi:A (3.21) BS01 ACP 7.6.2.1 GO:0000166 ... P32660 35294892
    569 7e4p:F (2.4) BS01 ACP N/A GO:0036211 ... N/A N/A
    570 7e4q:F (2.501) BS01 ACP N/A GO:0036211 ... N/A 34144258
    571 7e4r:F (2.597) BS01 ACP N/A GO:0036211 ... N/A 34144258
    572 7e4y:F (2.708) BS02 ACP N/A GO:0036211 ... N/A N/A
    573 7e4z:F (2.69) BS01 ACP N/A GO:0036211 ... N/A 34144258
    574 7emj:F (2.33) BS01 ACP N/A GO:0036211 ... N/A 36610121
    575 7en3:F (2.643) BS01 ACP N/A GO:0036211 ... N/A 34090207
    576 7exc:F (2.39) BS01 ACP N/A GO:0036211 ... N/A N/A
    577 7jfr:F (2.35) BS01 ACP N/A GO:0036211 ... N/A 33288628
    578 7k0s:A (4.5) BS01 ACP N/A GO:0005216 ... N/A N/A
    579 7k0s:B (4.5) BS01 ACP N/A GO:0005216 ... N/A N/A
    580 7k0s:C (4.5) BS01 ACP N/A GO:0005216 ... N/A N/A
    581 7k0s:D (4.5) BS01 ACP N/A GO:0005216 ... N/A N/A
    582 7k0t:A (4.3) BS01 ACP N/A GO:0005216 ... N/A 35257661
    583 7k0t:B (4.3) BS01 ACP N/A GO:0005216 ... N/A 35257661
    584 7k0t:C (4.3) BS01 ACP N/A GO:0005216 ... N/A 35257661
    585 7k0t:D (4.3) BS01 ACP N/A GO:0005216 ... N/A 35257661
    586 7kja:A (1.75) BS01 ACP 2.7.10.1 GO:0004672 ... P29317 34857764
    587 7kja:B (1.75) BS01 ACP 2.7.10.1 GO:0004672 ... P29317 34857764
    588 7kjc:A (2.3) BS01 ACP 2.7.10.1 GO:0004672 ... P29317 34857764
    589 7kjc:B (2.3) BS01 ACP 2.7.10.1 GO:0004672 ... P29317 34857764
    590 7ky8:A (3.85) BS04 ACP 7.6.2.1 GO:0000166 ... Q12675 33320091
    591 7l05:F (2.21) BS02 ACP N/A GO:0036211 ... N/A 34315762
    592 7lc3:B (3.23) BS04 ACP 7.2.2.6 GO:0000166 ... P03960 34272288
    593 7lgj:A (2.6) BS04 ACP 6.3.2.29
    6.3.2.30    		 GO:0005524 ... A0A068N621 34385683
    594 7lgj:A (2.6) BS05 ACP 6.3.2.29
    6.3.2.30    		 GO:0005524 ... A0A068N621 34385683
    595 7lgj:B (2.6) BS04 ACP 6.3.2.29
    6.3.2.30    		 GO:0005524 ... A0A068N621 34385683
    596 7lgj:B (2.6) BS05 ACP 6.3.2.29
    6.3.2.30    		 GO:0005524 ... A0A068N621 34385683
    597 7lgj:C (2.6) BS04 ACP 6.3.2.29
    6.3.2.30    		 GO:0005524 ... A0A068N621 34385683
    598 7lgj:C (2.6) BS05 ACP 6.3.2.29
    6.3.2.30    		 GO:0005524 ... A0A068N621 34385683
    599 7lgj:D (2.6) BS04 ACP 6.3.2.29
    6.3.2.30    		 GO:0005524 ... A0A068N621 34385683
    600 7lgj:D (2.6) BS05 ACP 6.3.2.29
    6.3.2.30    		 GO:0005524 ... A0A068N621 34385683
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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