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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

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BioLiP
Download all results in tab-seperated text for 704 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 4j99:B (1.8474) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 23871672
    202 4j99:C (1.8474) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 23871672
    203 4j99:D (1.8474) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 23871672
    204 4k33:A (2.3405) BS01 ACP 2.7.10.1 GO:0004672 ... P22607 23972473
    205 4kfu:A (1.892) BS01 ACP 3.-.-.- GO:0000166 ... D5IEZ9 23698307
    206 4kfu:A (1.892) BS02 ACP 3.-.-.- GO:0000166 ... D5IEZ9 23698307
    207 4kfu:B (1.892) BS01 ACP 3.-.-.- GO:0000166 ... D5IEZ9 23698307
    208 4kfu:B (1.892) BS02 ACP 3.-.-.- GO:0000166 ... D5IEZ9 23698307
    209 4kfu:C (1.892) BS01 ACP 3.-.-.- GO:0000166 ... D5IEZ9 23698307
    210 4kfu:D (1.892) BS01 ACP 3.-.-.- GO:0000166 ... D5IEZ9 23698307
    211 4lj6:A (1.9) BS01 ACP ? GO:0005524 ... Q9RA63 24531492
    212 4lj9:A (1.7) BS01 ACP ? GO:0005524 ... Q9RA63 24531492
    213 4lja:A (2.0) BS01 ACP ? GO:0005524 ... Q9RA63 24531492
    214 4mne:A (2.8483) BS01 ACP 2.7.12.2 GO:0004672 ... Q02750 25155755
    215 4mne:D (2.8483) BS01 ACP 2.7.12.2 GO:0004672 ... Q02750 25155755
    216 4mne:E (2.8483) BS01 ACP 2.7.12.2 GO:0004672 ... Q02750 25155755
    217 4mne:H (2.8483) BS01 ACP 2.7.12.2 GO:0004672 ... Q02750 25155755
    218 4mo4:A (1.67) BS01 ACP 2.7.1.170 GO:0005524 ... Q9I5Q5 24362022 MOAD: Kd=0.06mM
    PDBbind: -logKd/Ki=4.22, Kd=0.06mM
    219 4mo4:B (1.67) BS01 ACP 2.7.1.170 GO:0005524 ... Q9I5Q5 24362022 MOAD: Kd=0.06mM
    220 4mo4:C (1.67) BS01 ACP 2.7.1.170 GO:0005524 ... Q9I5Q5 24362022 MOAD: Kd=0.06mM
    221 4mo4:D (1.67) BS01 ACP 2.7.1.170 GO:0005524 ... Q9I5Q5 24362022 MOAD: Kd=0.06mM
    222 4mo5:A (1.75) BS02 ACP 2.7.1.170 GO:0005524 ... Q9I5Q5 24362022
    223 4mo5:B (1.75) BS02 ACP 2.7.1.170 GO:0005524 ... Q9I5Q5 24362022
    224 4mo5:C (1.75) BS02 ACP 2.7.1.170 GO:0005524 ... Q9I5Q5 24362022
    225 4mo5:D (1.75) BS02 ACP 2.7.1.170 GO:0005524 ... Q9I5Q5 24362022
    226 4mv3:A (1.69) BS01 ACP 6.3.4.14 GO:0003824 ... P43873 26020841
    227 4mv4:A (1.61) BS01 ACP 6.3.4.14 GO:0003824 ... P43873 26020841
    228 4mv8:A (2.06) BS02 ACP 6.3.4.14 GO:0003824 ... P43873 26020841
    229 4mwd:B (2.253) BS02 ACP 6.1.1.10 GO:0000166 ... Q38C91 24743796
    230 4nh1:A (3.3) BS02 ACP 2.7.11.1 GO:0004672 ... P68400 24594356
    231 4nh1:B (3.3) BS02 ACP 2.7.11.1 GO:0004672 ... P68400 24594356
    232 4o2b:F (2.3) BS01 ACP N/A GO:0036211 ... N/A 24530796
    233 4o4h:F (2.1) BS01 ACP N/A GO:0036211 ... N/A 24470331
    234 4o4i:F (2.4) BS01 ACP N/A GO:0036211 ... N/A 24470331
    235 4o4j:F (2.2) BS01 ACP N/A GO:0036211 ... N/A 24470331
    236 4oav:B (2.1) BS03 ACP 3.1.26.- GO:0003723 ... Q05823 24578532
    237 4oav:D (2.1) BS03 ACP 3.1.26.- GO:0003723 ... Q05823 24578532
    238 4rh3:A (3.02) BS01 ACP 2.7.1.11 GO:0003872 ... Q01813 26205495
    239 4rh3:B (3.02) BS03 ACP 2.7.1.11 GO:0003872 ... Q01813 26205495
    240 4rh3:C (3.02) BS01 ACP 2.7.1.11 GO:0003872 ... Q01813 26205495
    241 4rh3:D (3.02) BS02 ACP 2.7.1.11 GO:0003872 ... Q01813 26205495
    242 4rvz:Z (2.9) BS02 ACP 6.3.4.22 GO:0002101 ... O28025 25694369
    243 4s35:A (1.55) BS01 ACP 2.7.4.9 GO:0004798 ... O67099 28627020
    244 4s35:B (1.55) BS01 ACP 2.7.4.9 GO:0004798 ... O67099 28627020
    245 4tuy:F (2.1) BS01 ACP N/A GO:0036211 ... N/A 25114240
    246 4tv8:F (2.103) BS01 ACP N/A GO:0036211 ... N/A 25114240
    247 4tv9:F (2.0) BS01 ACP N/A GO:0036211 ... N/A 25114240
    248 4u98:A (1.15) BS01 ACP 2.7.1.175 GO:0005524 ... A1TH50 25619172
    249 4ueu:A (2.95) BS01 ACP N/A GO:0004672 ... N/A 25700521
    250 4uu1:A (2.8) BS02 ACP 7.2.2.10 GO:0000166 ... P04191 25103814
    251 4uxx:B (2.701) BS01 ACP 2.7.1.107 GO:0004143 ... P0ABN1 26673816
    252 4uxx:C (2.701) BS02 ACP 2.7.1.107 GO:0004143 ... P0ABN1 26673816
    253 4wza:E (1.8995) BS03 ACP 1.18.6.1 GO:0005524 ... P00459 25522159
    254 4wza:F (1.8995) BS02 ACP 1.18.6.1 GO:0005524 ... P00459 25522159
    255 4wza:H (1.8995) BS02 ACP 1.18.6.1 GO:0005524 ... P00459 25522159
    256 4wzb:E (2.3) BS01 ACP 1.18.6.1 GO:0005524 ... P00459 16123301
    257 4wzb:E (2.3) BS03 ACP 1.18.6.1 GO:0005524 ... P00459 16123301
    258 4wzb:F (2.3) BS02 ACP 1.18.6.1 GO:0005524 ... P00459 16123301
    259 4wzb:G (2.3) BS02 ACP 1.18.6.1 GO:0005524 ... P00459 16123301
    260 4wzb:H (2.3) BS02 ACP 1.18.6.1 GO:0005524 ... P00459 16123301
    261 4x9l:A (3.1) BS01 ACP ? GO:0005524 ... Q07078 26057797
    262 4xc0:A (1.77) BS01 ACP ? GO:0005524 ... P54651 26599366
    263 4xf7:A (1.93) BS02 ACP 2.7.1.64 GO:0000166 ... Q5JDA3 25972008
    264 4xf7:B (1.93) BS02 ACP 2.7.1.64 GO:0000166 ... Q5JDA3 25972008
    265 4xiv:A (3.0) BS01 ACP 2.7.13.3 GO:0000155 ... Q56310 26522934
    266 4xlv:A (2.3) BS01 ACP 2.7.10.1 GO:0004672 ... P06213 25758790
    267 4xou:A (2.8) BS03 ACP 7.2.2.10 GO:0000166 ... P04191 26175901
    268 4xz3:A (2.398) BS02 ACP ? GO:0000166 ... B1L3C9 26787904
    269 4xz3:A (2.398) BS03 ACP ? GO:0000166 ... B1L3C9 26787904
    270 4xz3:B (2.398) BS01 ACP ? GO:0005524 ... B1L7P8 26787904
    271 4xz3:C (2.398) BS01 ACP ? GO:0000166 ... B1L3C9 26787904
    272 4xz3:C (2.398) BS02 ACP ? GO:0000166 ... B1L3C9 26787904
    273 4xz3:D (2.398) BS01 ACP ? GO:0005524 ... B1L7P8 26787904
    274 4zdk:A (3.49) BS02 ACP 6.3.4.2 GO:0003883 ... P9WHK7 26097035
    275 4zdk:B (3.49) BS02 ACP 6.3.4.2 GO:0003883 ... P9WHK7 26097035
    276 4zhq:F (2.55) BS01 ACP N/A GO:0036211 ... N/A 26660762
    277 4zi7:F (2.51) BS01 ACP N/A GO:0036211 ... N/A 26660762
    278 4zol:F (2.5) BS01 ACP N/A GO:0036211 ... N/A 26660762
    279 5ar3:A (3.23) BS01 ACP 2.7.10.2
    2.7.11.1    		 GO:0004672 ... O43353 26455654
    280 5ar3:B (3.23) BS01 ACP 2.7.10.2
    2.7.11.1    		 GO:0004672 ... O43353 26455654
    281 5auo:B (1.8) BS01 ACP ? GO:0005524 ... Q5JIH4 26056269
    282 5aup:B (3.102) BS01 ACP ? GO:0005524 ... Q5JIH4 26056269
    283 5aup:B (3.102) BS02 ACP ? GO:0005524 ... Q5JIH4 26056269
    284 5aup:I (3.102) BS01 ACP ? GO:0005524 ... Q5JIH4 26056269
    285 5aup:I (3.102) BS02 ACP ? GO:0005524 ... Q5JIH4 26056269
    286 5bmv:F (2.5) BS01 ACP N/A GO:0036211 ... N/A 26660762
    287 5c3z:A (1.9) BS01 ACP 2.7.1.15 GO:0004747 ... Q9H477 N/A
    288 5c3z:B (1.9) BS01 ACP 2.7.1.15 GO:0004747 ... Q9H477 N/A
    289 5c40:A (1.5) BS01 ACP 2.7.1.15 GO:0004747 ... Q9H477 N/A
    290 5c40:B (1.5) BS01 ACP 2.7.1.15 GO:0004747 ... Q9H477 N/A
    291 5c41:A (1.95) BS01 ACP 2.7.1.15 GO:0004747 ... Q9H477 N/A
    292 5c41:B (1.95) BS01 ACP 2.7.1.15 GO:0004747 ... Q9H477 N/A
    293 5c41:C (1.95) BS01 ACP 2.7.1.15 GO:0004747 ... Q9H477 N/A
    294 5c41:D (1.95) BS01 ACP 2.7.1.15 GO:0004747 ... Q9H477 N/A
    295 5c8y:F (2.594) BS01 ACP N/A GO:0036211 ... N/A 26462166
    296 5c93:A (2.518) BS01 ACP N/A GO:0000155 ... N/A 28994408
    297 5c93:B (2.518) BS01 ACP N/A GO:0000155 ... N/A 28994408
    298 5ca0:F (2.501) BS01 ACP N/A GO:0036211 ... N/A 26462166
    299 5ca1:F (2.401) BS01 ACP N/A GO:0036211 ... N/A 26462166
    300 5cb4:F (2.193) BS01 ACP N/A GO:0036211 ... N/A 26462166
    301 5eg3:A (2.606) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 26687682
    302 5epv:A (2.51) BS01 ACP 2.7.13.3 GO:0004673 ... Q2YKK7 26851072
    303 5epv:B (2.51) BS01 ACP 2.7.13.3 GO:0004673 ... Q2YKK7 26851072
    304 5epv:C (2.51) BS01 ACP 2.7.13.3 GO:0004673 ... Q2YKK7 26851072
    305 5epv:D (2.51) BS01 ACP 2.7.13.3 GO:0004673 ... Q2YKK7 26851072
    306 5ezy:F (2.05) BS01 ACP N/A GO:0036211 ... N/A 28585532
    307 5f2r:A (2.15) BS01 ACP 3.6.4.10 GO:0005524 ... P11021 27144892 MOAD: Kd=0.000052M
    PDBbind: -logKd/Ki=4.28, Kd=52uM
    308 5f2r:B (2.15) BS01 ACP 3.6.4.10 GO:0005524 ... P11021 27144892 MOAD: Kd=0.000052M
    309 5fnv:F (2.61) BS01 ACP N/A GO:0036211 ... N/A 27357539
    310 5g15:A (2.06) BS01 ACP 2.7.11.1 GO:0000212 ... O14965 31239342
    311 5h74:F (2.6) BS01 ACP N/A GO:0036211 ... N/A N/A
    312 5h7o:F (2.8) BS01 ACP N/A GO:0036211 ... N/A 29180476
    313 5iuj:A (3.2) BS01 ACP 2.7.13.3 GO:0000155 ... O34757 27938660
    314 5iuj:B (3.2) BS01 ACP 2.7.13.3 GO:0000155 ... O34757 27938660
    315 5iuj:D (3.2) BS01 ACP 2.7.13.3 GO:0000155 ... O34757 27938660
    316 5iuj:E (3.2) BS01 ACP 2.7.13.3 GO:0000155 ... O34757 27938660
    317 5iuk:A (2.9) BS01 ACP 2.7.13.3 GO:0000155 ... O34757 27938660
    318 5iuk:B (2.9) BS01 ACP 2.7.13.3 GO:0000155 ... O34757 27938660
    319 5iuk:D (2.9) BS01 ACP 2.7.13.3 GO:0000155 ... O34757 27938660
    320 5iuk:E (2.9) BS01 ACP 2.7.13.3 GO:0000155 ... O34757 27938660
    321 5iul:A (3.153) BS01 ACP 2.7.13.3 GO:0000155 ... O34757 27938660
    322 5iul:B (3.153) BS01 ACP 2.7.13.3 GO:0000155 ... O34757 27938660
    323 5iul:D (3.153) BS01 ACP 2.7.13.3 GO:0000155 ... O34757 27938660
    324 5iul:E (3.153) BS01 ACP 2.7.13.3 GO:0000155 ... O34757 27938660
    325 5ium:A (3.162) BS01 ACP 2.7.13.3 GO:0000155 ... O34757 27938660
    326 5ium:B (3.162) BS01 ACP 2.7.13.3 GO:0000155 ... O34757 27938660
    327 5iyz:F (1.8) BS01 ACP N/A GO:0036211 ... N/A 27518442
    328 5j2u:F (2.5) BS01 ACP 6.3.2.25 GO:0000226 ... P38584 27518442
    329 5jcb:F (2.3) BS01 ACP N/A GO:0036211 ... N/A 28035796
    330 5jh7:F (2.25) BS01 ACP N/A GO:0036211 ... N/A 27321995
    331 5jqg:F (2.24) BS01 ACP N/A GO:0036211 ... N/A 27357539
    332 5jvd:F (2.393) BS02 ACP N/A GO:0036211 ... N/A 27224920
    333 5ksd:A (3.5) BS01 ACP 7.1.2.1 GO:0000166 ... P19456 28443028
    334 5ksd:B (3.5) BS01 ACP 7.1.2.1 GO:0000166 ... P19456 28443028
    335 5la6:F (2.1) BS01 ACP N/A GO:0036211 ... N/A 27395016
    336 5li9:A (1.79) BS01 ACP 2.7.11.13 GO:0004672 ... P41743 27554858
    337 5lov:F (2.4) BS01 ACP N/A GO:0036211 ... N/A 27856798
    338 5lxs:F (2.2) BS01 ACP N/A GO:0036211 ... N/A 28207984
    339 5lxt:F (1.9) BS01 ACP N/A GO:0036211 ... N/A 28207984
    340 5lyj:F (2.397) BS01 ACP N/A GO:0036211 ... N/A N/A
    341 5m7e:F (2.046) BS01 ACP N/A GO:0036211 ... N/A 28276440
    342 5m7g:F (2.248) BS01 ACP N/A GO:0036211 ... N/A 28276440
    343 5m8d:F (2.25) BS02 ACP N/A GO:0036211 ... N/A 28276440
    344 5m8g:F (2.147) BS02 ACP N/A GO:0036211 ... N/A 28276440
    345 5mf4:F (2.3) BS02 ACP N/A GO:0036211 ... N/A 30023505
    346 5nfz:F (2.1) BS02 ACP N/A GO:0036211 ... N/A 29023132
    347 5ng0:A (2.0) BS01 ACP 2.7.10.2
    2.7.11.1    		 GO:0004672 ... O43353 28545134
    348 5ng0:B (2.0) BS01 ACP 2.7.10.2
    2.7.11.1    		 GO:0004672 ... O43353 28545134
    349 5ng1:F (2.2) BS01 ACP N/A GO:0036211 ... N/A 29023132
    350 5njh:F (2.394) BS01 ACP N/A GO:0036211 ... N/A 28579361
    351 5o7a:F (2.495) BS01 ACP N/A GO:0036211 ... N/A 28640209
    352 5oow:A (2.9) BS01 ACP ? GO:0005524 ... P0A6Y8 29669923
    353 5oow:B (2.9) BS01 ACP ? GO:0005524 ... P0A6Y8 29669923
    354 5osk:F (2.11) BS01 ACP N/A GO:0036211 ... N/A 29227648
    355 5ov7:F (2.402) BS01 ACP N/A GO:0036211 ... N/A 28985505
    356 5s4l:F (2.3) BS01 ACP N/A GO:0036211 ... N/A 33951246
    357 5s4m:F (2.15) BS01 ACP N/A GO:0036211 ... N/A 33951246
    358 5s4n:F (2.53) BS01 ACP N/A GO:0036211 ... N/A 33951246
    359 5s4o:F (2.3) BS01 ACP N/A GO:0036211 ... N/A 33951246
    360 5s4p:F (2.29) BS01 ACP N/A GO:0036211 ... N/A 33951246
    361 5s4q:F (2.59) BS01 ACP N/A GO:0036211 ... N/A 33951246
    362 5s4r:F (2.35) BS01 ACP N/A GO:0036211 ... N/A 33951246
    363 5s4s:F (2.35) BS01 ACP N/A GO:0036211 ... N/A 33951246
    364 5s4t:F (2.27) BS01 ACP N/A GO:0036211 ... N/A 33951246
    365 5s4u:F (2.39) BS01 ACP N/A GO:0036211 ... N/A 33951246
    366 5s4v:F (2.3) BS01 ACP N/A GO:0036211 ... N/A 33951246
    367 5s4w:F (2.8) BS01 ACP N/A GO:0036211 ... N/A 33951246
    368 5s4x:F (2.53) BS01 ACP N/A GO:0036211 ... N/A 33951246
    369 5s4y:F (2.3) BS01 ACP N/A GO:0036211 ... N/A 33951246
    370 5s4z:F (2.1) BS01 ACP N/A GO:0036211 ... N/A 33951246
    371 5s50:F (3.1) BS01 ACP N/A GO:0036211 ... N/A 33951246
    372 5s51:F (2.4) BS01 ACP N/A GO:0036211 ... N/A 33951246
    373 5s52:F (2.83) BS01 ACP N/A GO:0036211 ... N/A 33951246
    374 5s53:F (2.75) BS01 ACP N/A GO:0036211 ... N/A 33951246
    375 5s54:F (2.4) BS01 ACP N/A GO:0036211 ... N/A 33951246
    376 5s55:F (2.3) BS01 ACP N/A GO:0036211 ... N/A 33951246
    377 5s56:F (2.25) BS01 ACP N/A GO:0036211 ... N/A 33951246
    378 5s57:F (2.45) BS01 ACP N/A GO:0036211 ... N/A 33951246
    379 5s58:F (2.3) BS01 ACP N/A GO:0036211 ... N/A 33951246
    380 5s59:F (2.6) BS01 ACP N/A GO:0036211 ... N/A 33951246
    381 5s5a:F (2.35) BS01 ACP N/A GO:0036211 ... N/A 33951246
    382 5s5b:F (2.3) BS01 ACP N/A GO:0036211 ... N/A 33951246
    383 5s5c:F (2.4) BS01 ACP N/A GO:0036211 ... N/A 33951246
    384 5s5d:F (1.9) BS01 ACP N/A GO:0036211 ... N/A 33951246
    385 5s5e:F (2.67) BS01 ACP N/A GO:0036211 ... N/A 33951246
    386 5s5f:F (2.24) BS01 ACP N/A GO:0036211 ... N/A 33951246
    387 5s5g:F (2.69) BS01 ACP N/A GO:0036211 ... N/A 33951246
    388 5s5h:F (2.5) BS01 ACP N/A GO:0036211 ... N/A 33951246
    389 5s5i:F (2.49) BS01 ACP N/A GO:0036211 ... N/A 33951246
    390 5s5j:F (2.25) BS01 ACP N/A GO:0036211 ... N/A 33951246
    391 5s5k:F (2.41) BS01 ACP N/A GO:0036211 ... N/A 33951246
    392 5s5l:F (2.25) BS01 ACP N/A GO:0036211 ... N/A 33951246
    393 5s5m:F (2.7) BS01 ACP N/A GO:0036211 ... N/A 33951246
    394 5s5n:F (2.9) BS01 ACP N/A GO:0036211 ... N/A 33951246
    395 5s5o:F (2.3) BS01 ACP N/A GO:0036211 ... N/A 33951246
    396 5s5p:F (2.79) BS01 ACP N/A GO:0036211 ... N/A 33951246
    397 5s5q:F (2.05) BS01 ACP N/A GO:0036211 ... N/A 33951246
    398 5s5r:F (2.3) BS01 ACP N/A GO:0036211 ... N/A 33951246
    399 5s5s:F (2.36) BS01 ACP N/A GO:0036211 ... N/A 33951246
    400 5s5t:F (2.53) BS01 ACP N/A GO:0036211 ... N/A 33951246
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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