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BioLiP
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1dwo:A (2.2) BS01 ACN 4.1.2.47 GO:0016829 ... P52705 11173464
    2 1fj3:A (2.0) BS06 ACN 3.4.24.27 GO:0004222 ... P00800 11287678
    3 1fj3:A (2.0) BS07 ACN 3.4.24.27 GO:0004222 ... P00800 11287678
    4 1fjo:A (2.0) BS06 ACN 3.4.24.27 GO:0004222 ... P00800 11287678
    5 1fjo:A (2.0) BS07 ACN 3.4.24.27 GO:0004222 ... P00800 11287678
    6 1fjo:A (2.0) BS08 ACN 3.4.24.27 GO:0004222 ... P00800 11287678
    7 1fjq:A (1.7) BS06 ACN 3.4.24.27 GO:0004222 ... P00800 11287678
    8 1fjq:A (1.7) BS07 ACN 3.4.24.27 GO:0004222 ... P00800 11287678
    9 1kv9:A (1.9) BS04 ACN 1.1.9.1 GO:0005509 ... Q8GR64 12057198
    10 1mpy:A (2.8) BS02 ACN 1.13.11.2 GO:0003824 ... P06622 10368270
    11 1mpy:B (2.8) BS02 ACN 1.13.11.2 GO:0003824 ... P06622 10368270
    12 1mpy:D (2.8) BS02 ACN 1.13.11.2 GO:0003824 ... P06622 10368270
    13 1rhc:A (1.8) BS02 ACN 1.1.99.- GO:0016705 ... O93734 15016352
    14 1sck:A (1.7) BS01 ACN 4.1.2.47 GO:0009694 ... P52704 14998991
    15 2c3c:A (2.15) BS03 ACN 1.8.1.5 GO:0003955 ... Q56839 16388586
    16 2c3c:B (2.15) BS03 ACN 1.8.1.5 GO:0003955 ... Q56839 16388586
    17 2fo9:A (2.0) BS02 ACN 3.4.21.36 GO:0004252 ... P00772 16488429
    18 3c6y:A (1.25) BS01 ACN 4.1.2.47 GO:0009694 ... P52704 18524775
    19 3yas:A (1.85) BS01 ACN 4.1.2.47 GO:0009694 ... P52704 10548044
    20 5z05:A (1.49) BS01 ACN ? GO:0005576 ... Q7YS85 29524427
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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