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BioLiP Library
Download all results in tab-seperated text for 71 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1adl:A (1.6) BS01 ACD ? GO:0005324 ... P04117 7929228 MOAD: Kd=4.4uM
    PDBbind: -logKd/Ki=5.36, Kd=4.4uM
    2 1cvu:A (2.4) BS01 ACD 1.14.99.1 GO:0001516 ... Q05769 10811226
    3 1cvu:B (2.4) BS02 ACD 1.14.99.1 GO:0001516 ... Q05769 10811226
    4 1diy:A (3.0) BS02 ACD 1.14.99.1 GO:0001516 ... P05979 10988074
    5 1gnj:A (2.6) BS01 ACD ? GO:0003677 ... P02768 11743713 PDBbind: -logKd/Ki=7.04, Kd=91nM
    6 1gnj:A (2.6) BS02 ACD ? GO:0003677 ... P02768 11743713 PDBbind: -logKd/Ki=7.04, Kd=91nM
    7 1gnj:A (2.6) BS03 ACD ? GO:0003677 ... P02768 11743713 PDBbind: -logKd/Ki=7.04, Kd=91nM
    8 1gnj:A (2.6) BS04 ACD ? GO:0003677 ... P02768 11743713 PDBbind: -logKd/Ki=7.04, Kd=91nM
    9 1gnj:A (2.6) BS05 ACD ? GO:0003677 ... P02768 11743713 PDBbind: -logKd/Ki=7.04, Kd=91nM
    10 1gnj:A (2.6) BS06 ACD ? GO:0003677 ... P02768 11743713 PDBbind: -logKd/Ki=7.04, Kd=91nM
    11 1gnj:A (2.6) BS07 ACD ? GO:0003677 ... P02768 11743713 PDBbind: -logKd/Ki=7.04, Kd=91nM
    12 1gnj:A (2.6) BS08 ACD ? GO:0003677 ... P02768 11743713 PDBbind: -logKd/Ki=7.04, Kd=91nM
    13 1u67:A (3.1) BS02 ACD 1.14.99.1 GO:0004601 ... P05979 15292194
    14 1vyg:A (2.4) BS01 ACD ? GO:0005504 ... P29498 15476393 MOAD: Kd=10nM
    PDBbind: -logKd/Ki=8.00, Kd=10nM
    15 2lbv:A (-1.00) BS02 ACD ? GO:0005576 ... Q9I9P7 21951132 PDBbind: -logKd/Ki=7.59, Kd=26nM
    16 3fg4:B (2.31) BS03 ACD 1.13.11.40
    4.2.1.-    		 GO:0005506 ... O16025 19594169
    17 3hs5:A (2.1) BS01 ACD 1.14.99.1 GO:0001516 ... Q05769 20463020
    18 3hs5:B (2.1) BS01 ACD 1.14.99.1 GO:0001516 ... Q05769 20463020
    19 3krk:A (2.4) BS01 ACD 1.14.99.1 GO:0001516 ... Q05769 20463020
    20 3krk:B (2.4) BS01 ACD 1.14.99.1 GO:0001516 ... Q05769 20463020
    21 3olt:A (2.45) BS01 ACD 1.14.99.1 GO:0001516 ... Q05769 21489986
    22 3olt:B (2.45) BS01 ACD 1.14.99.1 GO:0001516 ... Q05769 21489986
    23 3tzi:A (2.15) BS01 ACD 1.14.99.1 GO:0001516 ... Q05769 22637474
    24 3tzi:B (2.15) BS01 ACD 1.14.99.1 GO:0001516 ... Q05769 22637474
    25 3v99:A (2.252) BS02 ACD 1.13.11.-
    1.13.11.34    		 GO:0001676 ... P09917 22516296
    26 4b0n:A (2.85) BS01 ACD 2.3.1.- GO:0009058 ... D8LJ35 23983220
    27 4b0n:B (2.85) BS01 ACD 2.3.1.- GO:0009058 ... D8LJ35 23983220
    28 4de6:A (2.18) BS01 ACD ? GO:0005506 ... P02791 22362897
    29 4qwt:C (2.002) BS03 ACD 1.13.11.40
    4.2.1.-    		 GO:0005506 ... O16025 25231982
    30 4zga:A (2.6) BS04 ACD 3.1.4.39 GO:0003676 ... Q13822 26371182
    31 5csd:A (1.45) BS01 ACD ? N/A A0A093VKV7 28111099 MOAD: Kd=0.000000064M
    PDBbind: -logKd/Ki=7.89, Kd=13nM
    32 5csd:A (1.45) BS02 ACD ? N/A A0A093VKV7 28111099 MOAD: Kd=0.000000064M
    PDBbind: -logKd/Ki=7.89, Kd=13nM
    33 5csd:B (1.45) BS01 ACD ? N/A A0A093VKV7 28111099 MOAD: Kd=0.000000064M
    34 5csd:B (1.45) BS02 ACD ? N/A A0A093VKV7 28111099 MOAD: Kd=0.000000064M
    35 5csd:C (1.45) BS01 ACD ? N/A A0A093VKV7 28111099 MOAD: Kd=0.000000064M
    36 5csd:D (1.45) BS01 ACD ? N/A A0A093VKV7 28111099 MOAD: Kd=0.000000064M
    37 5ecf:B (2.6) BS01 ACD ? N/A A8HBN5 30670555
    38 5ecf:I (2.6) BS01 ACD ? N/A A8HBN5 30670555
    39 5ecf:I (2.6) BS02 ACD ? N/A A8HBN5 30670555
    40 5ecf:J (2.6) BS01 ACD ? N/A A8HBN5 30670555
    41 5fb7:A (1.5) BS01 ACD ? N/A A0A093VKV7 28111099 MOAD: Kd=0.000000064M
    PDBbind: -logKd/Ki=7.89, Kd=13nM
    42 5fb7:A (1.5) BS02 ACD ? N/A A0A093VKV7 28111099 MOAD: Kd=0.000000064M
    PDBbind: -logKd/Ki=7.89, Kd=13nM
    43 5fb7:B (1.5) BS01 ACD ? N/A A0A093VKV7 28111099 MOAD: Kd=0.000000064M
    44 5fb7:B (1.5) BS02 ACD ? N/A A0A093VKV7 28111099 MOAD: Kd=0.000000064M
    45 5fb7:C (1.5) BS01 ACD ? N/A A0A093VKV7 28111099 MOAD: Kd=0.000000064M
    PDBbind: -logKd/Ki=7.89, Kd=13nM
    46 5fb7:C (1.5) BS02 ACD ? N/A A0A093VKV7 28111099 MOAD: Kd=0.000000064M
    PDBbind: -logKd/Ki=7.89, Kd=13nM
    47 5fb7:D (1.5) BS01 ACD ? N/A A0A093VKV7 28111099 MOAD: Kd=0.000000064M
    48 5fb7:D (1.5) BS02 ACD ? N/A A0A093VKV7 28111099 MOAD: Kd=0.000000064M
    49 5j5l:A (1.7) BS01 ACD ? N/A Q4WZA5 N/A
    50 6lx9:A (1.4) BS02 ACD ? GO:0003677 ... Q07869 33205029 BindingDB: IC50=1200nM
    51 6mcz:A (2.1) BS01 ACD ? GO:0003677 ... P37231 30575522 BindingDB: IC50=1600nM
    52 6mcz:B (2.1) BS01 ACD ? GO:0003677 ... P37231 30575522 BindingDB: IC50=1600nM
    53 6md2:A (2.2) BS02 ACD ? GO:0003677 ... P37231 30575522 BindingDB: IC50=1600nM
    54 6md2:B (2.2) BS02 ACD ? GO:0003677 ... P37231 30575522 BindingDB: IC50=1600nM
    55 6nbn:A (-1.00) BS01 ACD ? GO:0005549 ... Q1HRL7 32094450
    56 6ofy:A (2.2) BS02 ACD 1.14.99.1 GO:0001516 ... Q05769 31469551
    57 6ofy:B (2.2) BS02 ACD 1.14.99.1 GO:0001516 ... Q05769 31469551
    58 6oii:A (1.85) BS01 ACD ? GO:0005549 ... Q1HRL7 32094450
    59 6oii:B (1.85) BS01 ACD ? GO:0005549 ... Q1HRL7 32094450
    60 7wj1:A (0.86) BS01 ACD ? GO:0005515 ... P05413 N/A
    61 8ghd:A (2.2) BS03 ACD 1.13.11.-
    1.13.11.31
    1.13.11.33
    3.3.2.-    		 GO:0001676 ... P18054 37506345
    62 8ghd:B (2.2) BS03 ACD 1.13.11.-
    1.13.11.31
    1.13.11.33
    3.3.2.-    		 GO:0001676 ... P18054 37506345
    63 8ghd:C (2.2) BS03 ACD 1.13.11.-
    1.13.11.31
    1.13.11.33
    3.3.2.-    		 GO:0001676 ... P18054 37506345
    64 8ghd:D (2.2) BS03 ACD 1.13.11.-
    1.13.11.31
    1.13.11.33
    3.3.2.-    		 GO:0001676 ... P18054 37506345
    65 8ghd:E (2.2) BS03 ACD 1.13.11.-
    1.13.11.31
    1.13.11.33
    3.3.2.-    		 GO:0001676 ... P18054 37506345
    66 8ghd:F (2.2) BS03 ACD 1.13.11.-
    1.13.11.31
    1.13.11.33
    3.3.2.-    		 GO:0001676 ... P18054 37506345
    67 8h0c:A (1.98) BS01 ACD ? GO:0006629 ... A0A7Y4B3E8 37558668
    68 8v6n:A (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    69 8v6n:B (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    70 8v6n:C (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    71 8v6n:D (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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