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BioLiP
Download all results in tab-seperated text for 343 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 6x3z:D (3.23) BS02 ABU ? GO:0004888 ... P14867 32879488 BindingDB: Ki=21.37nM, EC50=3802nM
    202 6x40:A (2.86) BS01 ABU ? GO:0004888 ... P47870 32879488
    203 6x40:B (2.86) BS01 ABU ? GO:0004888 ... P14867 32879488 BindingDB: Ki=21.37nM, EC50=3802nM
    204 6x40:C (2.86) BS01 ABU ? GO:0004888 ... P47870 32879488
    205 6x40:D (2.86) BS02 ABU ? GO:0004888 ... P14867 32879488 BindingDB: Ki=21.37nM, EC50=3802nM
    206 7pbd:A (3.04) BS01 ABU ? GO:0004888 ... P14867 35140402
    207 7pbd:B (3.04) BS01 ABU ? GO:0004888 ... P28472 35140402
    208 7pbd:E (3.04) BS01 ABU ? GO:0004888 ... P28472 35140402
    209 7pbz:B (2.79) BS01 ABU ? GO:0004888 ... P28472 35140402
    210 7pbz:E (2.79) BS01 ABU ? GO:0004888 ... P28472 35140402
    211 7qn7:A (3.0) BS01 ABU ? GO:0004888 ... P48169 35355020
    212 7qn7:B (3.0) BS01 ABU ? GO:0004888 ... P28472 35355020
    213 7qna:A (3.0) BS01 ABU ? GO:0004888 ... P48169 35355020
    214 7qna:B (3.0) BS01 ABU ? GO:0004888 ... P28472 35355020
    215 7qnb:B (3.1) BS01 ABU ? GO:0004888 ... P28472 35355020
    216 7t0z:B (3.0) BS01 ABU ? GO:0004888 ... P14867 35803245
    217 7t0z:C (3.0) BS01 ABU ? GO:0004888 ... P47870 35803245
    218 7t0z:D (3.0) BS02 ABU ? GO:0004888 ... P14867 35803245
    219 7x4y:A (1.9) BS02 ABU 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    220 7x4y:B (1.9) BS02 ABU 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    221 7x4y:B (1.9) BS04 ABU 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    222 7x4y:C (1.9) BS03 ABU 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    223 7x4y:D (1.9) BS02 ABU 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    224 7x4y:E (1.9) BS03 ABU 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    225 7x4y:F (1.9) BS02 ABU 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    226 7x4y:F (1.9) BS04 ABU 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    227 7y7w:A (2.4) BS01 ABU ? GO:0005332 ... P30531 37400655
    228 8bn5:A (1.9) BS02 ABU ? GO:0015276 ... Q9ULK0 38060673
    229 8bn5:B (1.9) BS02 ABU ? GO:0015276 ... Q9ULK0 38060673
    230 8dd2:A (2.9) BS02 ABU ? GO:0004888 ... P47870 35933426
    231 8dd2:B (2.9) BS02 ABU ? GO:0004888 ... P14867 35933426
    232 8dd2:C (2.9) BS02 ABU ? GO:0004888 ... P47870 35933426
    233 8dd3:A (2.9) BS01 ABU ? GO:0004888 ... P47870 35933426
    234 8dd3:B (2.9) BS01 ABU ? GO:0004888 ... P14867 35933426
    235 8dd3:C (2.9) BS01 ABU ? GO:0004888 ... P47870 35933426
    236 8foi:A (2.5) BS03 ABU ? GO:0004888 ... P62812 37730991
    237 8foi:B (2.5) BS01 ABU ? GO:0004888 ... P63137 37730991
    238 8foi:C (2.5) BS01 ABU ? GO:0004888 ... P62812 37730991
    239 8foi:E (2.5) BS02 ABU ? GO:0004888 ... P63137 37730991
    240 8g4n:A (2.67) BS03 ABU ? GO:0004888 ... P62812 37730991
    241 8g4n:B (2.67) BS01 ABU ? GO:0004888 ... P63137 37730991
    242 8g4n:C (2.67) BS01 ABU ? GO:0004888 ... P62812 37730991
    243 8g4n:E (2.67) BS02 ABU ? GO:0004888 ... P63137 37730991
    244 8g4x:A (2.56) BS03 ABU ? GO:0004888 ... P62812 37730991
    245 8g4x:B (2.56) BS01 ABU ? GO:0004888 ... P63137 37730991
    246 8g4x:C (2.56) BS01 ABU ? GO:0004888 ... P26049 37730991
    247 8g4x:E (2.56) BS02 ABU ? GO:0004888 ... P63137 37730991
    248 8g5f:A (2.64) BS03 ABU ? GO:0004888 ... P26049 37730991
    249 8g5f:B (2.64) BS01 ABU ? GO:0004888 ... P63137 37730991
    250 8g5f:C (2.64) BS01 ABU ? GO:0004888 ... P62812 37730991
    251 8g5f:E (2.64) BS02 ABU ? GO:0004888 ... P63137 37730991
    252 8g5g:A (2.94) BS03 ABU ? GO:0004888 ... P62812 37730991
    253 8g5g:B (2.94) BS01 ABU ? GO:0004888 ... P63137 37730991
    254 8g5g:C (2.94) BS01 ABU ? GO:0004888 ... P26049 37730991
    255 8g5g:E (2.94) BS02 ABU ? GO:0004888 ... P63137 37730991
    256 8g5h:A (2.89) BS01 ABU ? GO:0004888 ... P26049 37730991
    257 8g5h:B (2.89) BS01 ABU ? GO:0004888 ... P63137 37730991
    258 8g5h:C (2.89) BS01 ABU ? GO:0004888 ... P62812 37730991
    259 8g5h:E (2.89) BS01 ABU ? GO:0004888 ... P63137 37730991
    260 8gnk:A (3.1) BS03 ABU ? GO:0003333 ... P23978 37400654
    261 8hp7:A (1.43) BS01 ABU 3.8.1.2 GO:0016787 ... A0A0S6WSA3 N/A
    262 8hp7:B (1.43) BS01 ABU 3.8.1.2 GO:0016787 ... A0A0S6WSA3 N/A
    263 8hp7:C (1.43) BS01 ABU 3.8.1.2 GO:0016787 ... A0A0S6WSA3 N/A
    264 8jv1:A (1.309) BS01 ABU N/A N/A B6BQH5 N/A
    265 8op9:A (3.36) BS01 ABU ? GO:0004888 ... P24046 37659407
    266 8op9:A (3.36) BS02 ABU ? GO:0004888 ... P24046 37659407
    267 8op9:B (3.36) BS01 ABU ? GO:0004888 ... P24046 37659407
    268 8op9:B (3.36) BS02 ABU ? GO:0004888 ... P24046 37659407
    269 8op9:C (3.36) BS01 ABU ? GO:0004888 ... P24046 37659407
    270 8op9:D (3.36) BS01 ABU ? GO:0004888 ... P24046 37659407
    271 8op9:E (3.36) BS01 ABU ? GO:0004888 ... P24046 37659407
    272 8op9:E (3.36) BS02 ABU ? GO:0004888 ... P24046 37659407
    273 8oqa:A (2.9) BS01 ABU ? GO:0004888 ... P24046 37659407
    274 8oqa:B (2.9) BS01 ABU ? GO:0004888 ... P24046 37659407
    275 8oqa:C (2.9) BS01 ABU ? GO:0004888 ... P24046 37659407
    276 8oqa:D (2.9) BS01 ABU ? GO:0004888 ... P24046 37659407
    277 8oqa:D (2.9) BS02 ABU ? GO:0004888 ... P24046 37659407
    278 8oqa:E (2.9) BS01 ABU ? GO:0004888 ... P24046 37659407
    279 8rh8:A (2.66) BS01 ABU N/A N/A P24046 N/A
    280 8rh8:A (2.66) BS02 ABU N/A N/A P24046 N/A
    281 8rh8:B (2.66) BS01 ABU N/A N/A P24046 N/A
    282 8rh8:B (2.66) BS02 ABU N/A N/A P24046 N/A
    283 8rh8:C (2.66) BS01 ABU N/A N/A P24046 N/A
    284 8rh8:C (2.66) BS02 ABU N/A N/A P24046 N/A
    285 8rh8:D (2.66) BS01 ABU N/A N/A P24046 N/A
    286 8rh8:D (2.66) BS02 ABU N/A N/A P24046 N/A
    287 8rh8:E (2.66) BS01 ABU N/A N/A P24046 N/A
    288 8rh8:E (2.66) BS02 ABU N/A N/A P24046 N/A
    289 8rhg:A (3.01) BS01 ABU N/A N/A P24046 N/A
    290 8rhg:B (3.01) BS01 ABU N/A N/A P24046 N/A
    291 8rhg:C (3.01) BS01 ABU N/A N/A P24046 N/A
    292 8rhg:C (3.01) BS02 ABU N/A N/A P24046 N/A
    293 8rhg:D (3.01) BS01 ABU N/A N/A P24046 N/A
    294 8rhg:D (3.01) BS02 ABU N/A N/A P24046 N/A
    295 8rhg:E (3.01) BS01 ABU N/A N/A P24046 N/A
    296 8rhg:E (3.01) BS02 ABU N/A N/A P24046 N/A
    297 8sgo:A (2.65) BS01 ABU ? GO:0004888 ... P47870 37607940
    298 8sgo:B (2.65) BS01 ABU ? GO:0004888 ... P14867 37607940
    299 8sgo:C (2.65) BS01 ABU ? GO:0004888 ... P47870 37607940
    300 8sgo:D (2.65) BS01 ABU ? GO:0004888 ... P14867 37607940
    301 8si9:A (2.98) BS02 ABU ? GO:0004888 ... P47870 37607940
    302 8si9:B (2.98) BS02 ABU ? GO:0004888 ... P14867 37607940
    303 8si9:C (2.98) BS01 ABU ? GO:0004888 ... P47870 37607940
    304 8si9:D (2.98) BS01 ABU ? GO:0004888 ... P14867 37607940
    305 8sid:A (2.71) BS01 ABU ? GO:0004888 ... P47870 37607940
    306 8sid:B (2.71) BS01 ABU ? GO:0004888 ... P14867 37607940
    307 8sid:C (2.71) BS01 ABU ? GO:0004888 ... P47870 37607940
    308 8sid:D (2.71) BS01 ABU ? GO:0004888 ... P14867 37607940
    309 8vqy:A (2.82) BS01 ABU N/A N/A P47870 38898000
    310 8vqy:B (2.82) BS01 ABU N/A N/A P14867 38898000
    311 8vqy:C (2.82) BS01 ABU N/A N/A P47870 38898000
    312 8vqy:D (2.82) BS01 ABU N/A N/A P14867 38898000
    313 8vrn:A (2.57) BS01 ABU N/A N/A P47870 38898000
    314 8vrn:B (2.57) BS01 ABU N/A N/A P14867 38898000
    315 8vrn:C (2.57) BS01 ABU N/A N/A P47870 38898000
    316 8vrn:D (2.57) BS02 ABU N/A N/A P14867 38898000
    317 8wq9:A (1.97) BS01 ABU 3.5.2.2 GO:0004157 ... Q9I676 38056157
    318 8wq9:A (1.97) BS02 ABU 3.5.2.2 GO:0004157 ... Q9I676 38056157
    319 8wq9:B (1.97) BS01 ABU 3.5.2.2 GO:0004157 ... Q9I676 38056157
    320 8wq9:B (1.97) BS02 ABU 3.5.2.2 GO:0004157 ... Q9I676 38056157
    321 9ctq:A (2.41) BS02 ABU N/A N/A O76090 39277606
    322 9ctq:B (2.41) BS02 ABU N/A N/A O76090 39277606
    323 9ctq:C (2.41) BS02 ABU N/A N/A O76090 39277606
    324 9ctq:D (2.41) BS02 ABU N/A N/A O76090 39277606
    325 9ctq:E (2.41) BS02 ABU N/A N/A O76090 39277606
    326 9ctr:A (2.42) BS01 ABU N/A N/A O76090 39277606
    327 9ctr:A (2.42) BS03 ABU N/A N/A O76090 39277606
    328 9ctr:B (2.42) BS02 ABU N/A N/A O76090 39277606
    329 9ctr:B (2.42) BS03 ABU N/A N/A O76090 39277606
    330 9ctr:C (2.42) BS01 ABU N/A N/A O76090 39277606
    331 9ctr:D (2.42) BS02 ABU N/A N/A O76090 39277606
    332 9ctr:E (2.42) BS02 ABU N/A N/A O76090 39277606
    333 9cts:A (2.45) BS01 ABU N/A N/A O76090 39277606
    334 9cts:A (2.45) BS03 ABU N/A N/A O76090 39277606
    335 9cts:B (2.45) BS02 ABU N/A N/A O76090 39277606
    336 9cts:B (2.45) BS03 ABU N/A N/A O76090 39277606
    337 9cts:C (2.45) BS02 ABU N/A N/A O76090 39277606
    338 9cts:D (2.45) BS01 ABU N/A N/A O76090 39277606
    339 9cts:E (2.45) BS02 ABU N/A N/A O76090 39277606
    340 9cts:E (2.45) BS03 ABU N/A N/A O76090 39277606
    341 9eqg:A (2.4) BS03 ABU N/A N/A P14867 39261733
    342 9eqg:B (2.4) BS01 ABU N/A N/A P28472 39261733
    343 9eqg:E (2.4) BS02 ABU N/A N/A P28472 39261733
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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