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BioLiP
Download all results in tab-seperated text for 49 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3jrq:B (2.1) BS01 A8S ? N/A Q8VZS8 19855379
    2 3jrs:A (2.05) BS01 A8S ? GO:0004864 ... Q8VZS8 19855379 MOAD: Kd=52uM
    PDBbind: -logKd/Ki=4.28, Kd=52uM
    3 3jrs:B (2.05) BS01 A8S ? GO:0004864 ... Q8VZS8 19855379 MOAD: Kd=52uM
    4 3jrs:C (2.05) BS01 A8S ? GO:0004864 ... Q8VZS8 19855379 MOAD: Kd=52uM
    5 3k3k:B (1.7) BS01 A8S ? GO:0004864 ... O49686 19933100
    6 3k90:A (2.0) BS01 A8S ? GO:0004864 ... O49686 19898494
    7 3k90:D (2.0) BS01 A8S ? GO:0004864 ... O49686 19898494
    8 3kb0:A (1.95) BS01 A8S ? GO:0004864 ... O80992 N/A
    9 3kb3:A (1.95) BS01 A8S ? GO:0004864 ... O80992 N/A PDBbind: -logKd/Ki=6.82, IC50=0.15uM
    10 3kdi:A (2.379) BS01 A8S ? GO:0004864 ... O80992 19893533
    11 3kdj:A (1.878) BS01 A8S ? GO:0004864 ... Q8VZS8 19893533
    12 3oqu:A (2.68) BS01 A8S ? GO:0004864 ... Q84MC7 23844015
    13 3oqu:B (2.68) BS01 A8S ? GO:0004864 ... Q84MC7 23844015
    14 3qn1:A (1.8) BS01 A8S ? GO:0004864 ... O49686 21357183
    15 3r6p:A (2.7) BS01 A8S ? GO:0004864 ... Q8H1R0 N/A
    16 3ujl:A (2.5) BS01 A8S ? GO:0004864 ... O80992 22116026
    17 3w9r:A (1.9) BS01 A8S ? GO:0004864 ... Q84MC7 24645846 MOAD: Kd=0.66uM
    PDBbind: -logKd/Ki=6.18, Kd=0.66uM
    18 3zvu:A (2.1) BS01 A8S ? GO:0004864 ... O49686 21847091 MOAD: Kd=97uM
    19 4ds8:A (2.21) BS01 A8S ? GO:0004864 ... Q9SSM7 22579247
    20 4dsb:A (2.7) BS01 A8S ? N/A Q9SSM7 22579247
    21 4dsb:B (2.7) BS01 A8S ? N/A Q9SSM7 22579247
    22 4dsc:A (1.95) BS01 A8S ? N/A Q9SSM7 22579247
    23 4dsc:B (1.95) BS01 A8S ? N/A Q9SSM7 22579247
    24 4mkv:B (2.15) BS02 A8S 4.1.1.39 GO:0000287 ... P04717 26197050
    25 4oic:A (1.999) BS01 A8S ? GO:0004864 ... Q5Z8S0 24743650 MOAD: Kd=31.3uM
    26 5gwo:C (2.816) BS01 A8S ? N/A Q6EN42 28827170
    27 5gwo:D (2.816) BS01 A8S ? N/A Q6EN42 28827170
    28 5gwp:C (2.577) BS01 A8S ? N/A Q6EN42 28827170
    29 5gwp:D (2.577) BS01 A8S ? N/A Q6EN42 28827170
    30 5jo2:A (2.42) BS01 A8S ? N/A Q9SSM7 27518563
    31 5mmx:A (2.882) BS01 A8S ? GO:0004864 ... A0A067E666 28736053
    32 5mmx:B (2.882) BS01 A8S ? GO:0004864 ... A0A067E666 28736053
    33 5mn0:A (2.0) BS01 A8S ? GO:0004864 ... A0A067E666 28736053
    34 5mob:A (1.669) BS01 A8S N/A N/A N/A 28736053 MOAD: Kd=90uM
    PDBbind: -logKd/Ki=4.05, Kd=90uM
    35 5ujv:A (2.7) BS01 A8S ? GO:0004864 ... A0A2D1UXN2 29070857 PDBbind: -logKd/Ki=3.60, Kd=249uM
    36 5ujv:B (2.7) BS01 A8S ? GO:0004864 ... A0A2D1UXN2 29070857
    37 5ujv:C (2.7) BS01 A8S ? GO:0004864 ... A0A2D1UXN2 29070857
    38 5zcg:C (2.1) BS01 A8S ? N/A Q6EN42 31541388
    39 5zcg:D (2.1) BS01 A8S ? N/A Q6EN42 31541388
    40 5zch:C (2.474) BS01 A8S ? N/A Q6EN42 31541388
    41 5zch:D (2.474) BS01 A8S ? N/A Q6EN42 31541388
    42 5zcl:C (2.661) BS01 A8S ? N/A Q6EN42 31541388
    43 5zcl:D (2.661) BS01 A8S ? N/A Q6EN42 31541388
    44 6zzy:9 (3.16) BS05 A8S ? GO:0009765 ... A0A2P6TMI2 34462576
    45 7z1r:D000 (1.601) BS01 A8S ? GO:0004864 ... A0A3Q7HTY9 35734246
    46 8ay9:A (2.281) BS01 A8S ? GO:0004864 ... A0A067E666 36897942
    47 8i39:A (2.85) BS01 A8S ? GO:0005524 ... Q84TH5 37666961
    48 8i39:B (2.85) BS01 A8S ? GO:0005524 ... Q84TH5 37666961
    49 8wbx:B (3.23) BS01 A8S ? GO:0005524 ... Q84TH5 38050355
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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