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BioLiP
Download all results in tab-seperated text for 935 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 8j0d:3 (3.19) BS11 A86 ? GO:0009416 ... B8BUU4 37878698
    802 8j0d:3 (3.19) BS13 A86 ? GO:0009416 ... B8BUU4 37878698
    803 8j0d:4 (3.19) BS02 A86 ? GO:0009416 ... B8BVI1 37878698
    804 8j0d:4 (3.19) BS04 A86 ? GO:0009416 ... B8BVI1 37878698
    805 8j0d:5 (3.19) BS02 A86 ? GO:0009765 ... B8BX92 37878698
    806 8j0d:5 (3.19) BS03 A86 ? GO:0009765 ... B8BX92 37878698
    807 8j0d:5 (3.19) BS04 A86 ? GO:0009765 ... B8BX92 37878698
    808 8j0d:5 (3.19) BS05 A86 ? GO:0009765 ... B8BX92 37878698
    809 8j0d:6 (3.19) BS02 A86 ? GO:0009416 ... B8CEV5 37878698
    810 8j0d:6 (3.19) BS03 A86 ? GO:0009416 ... B8CEV5 37878698
    811 8j0d:6 (3.19) BS04 A86 ? GO:0009416 ... B8CEV5 37878698
    812 8j5k:0 (2.93) BS02 A86 N/A GO:0009765 ... N/A 38071196
    813 8j5k:1 (2.93) BS03 A86 ? GO:0009416 ... B8BX93 38071196
    814 8j5k:2 (2.93) BS01 A86 N/A GO:0009765 ... N/A 38071196
    815 8j5k:2 (2.93) BS02 A86 N/A GO:0009765 ... N/A 38071196
    816 8j5k:3 (2.93) BS01 A86 ? GO:0009416 ... B8BVI1 38071196
    817 8j5k:4 (2.93) BS01 A86 N/A N/A N/A 38071196
    818 8j5k:4 (2.93) BS02 A86 N/A N/A N/A 38071196
    819 8j5k:5 (2.93) BS02 A86 N/A GO:0009765 ... N/A 38071196
    820 8j5k:6 (2.93) BS03 A86 ? GO:0009416 ... B8BX93 38071196
    821 8j5k:7 (2.93) BS01 A86 N/A GO:0009765 ... N/A 38071196
    822 8j5k:7 (2.93) BS02 A86 N/A GO:0009765 ... N/A 38071196
    823 8j5k:8 (2.93) BS01 A86 ? GO:0009416 ... B8BVI1 38071196
    824 8j5k:9 (2.93) BS01 A86 N/A N/A N/A 38071196
    825 8j5k:9 (2.93) BS02 A86 N/A N/A N/A 38071196
    826 8j5k:P (2.93) BS09 A86 ? GO:0009416 ... B8BUU4 38071196
    827 8j5k:p (2.93) BS09 A86 ? GO:0009416 ... B8BUU4 38071196
    828 8j7z:A (2.72) BS01 A86 ? GO:0009416 ... O65890 38071196
    829 8j7z:A (2.72) BS02 A86 ? GO:0009416 ... O65890 38071196
    830 8j7z:A (2.72) BS03 A86 ? GO:0009416 ... O65890 38071196
    831 8j7z:A (2.72) BS04 A86 ? GO:0009416 ... O65890 38071196
    832 8j7z:A (2.72) BS05 A86 ? GO:0009416 ... O65890 38071196
    833 8j7z:A (2.72) BS06 A86 ? GO:0009416 ... O65890 38071196
    834 8j7z:A (2.72) BS07 A86 ? GO:0009416 ... O65890 38071196
    835 8j7z:B (2.72) BS02 A86 ? GO:0009416 ... O65890 38071196
    836 8j7z:B (2.72) BS03 A86 ? GO:0009416 ... O65890 38071196
    837 8j7z:B (2.72) BS04 A86 ? GO:0009416 ... O65890 38071196
    838 8j7z:B (2.72) BS05 A86 ? GO:0009416 ... O65890 38071196
    839 8j7z:B (2.72) BS06 A86 ? GO:0009416 ... O65890 38071196
    840 8j7z:B (2.72) BS07 A86 ? GO:0009416 ... O65890 38071196
    841 8j7z:B (2.72) BS08 A86 ? GO:0009416 ... O65890 38071196
    842 8j7z:C (2.72) BS03 A86 ? GO:0009416 ... O65890 38071196
    843 8j7z:C (2.72) BS04 A86 ? GO:0009416 ... O65890 38071196
    844 8j7z:C (2.72) BS05 A86 ? GO:0009416 ... O65890 38071196
    845 8j7z:C (2.72) BS06 A86 ? GO:0009416 ... O65890 38071196
    846 8j7z:C (2.72) BS07 A86 ? GO:0009416 ... O65890 38071196
    847 8j7z:C (2.72) BS08 A86 ? GO:0009416 ... O65890 38071196
    848 8j7z:C (2.72) BS09 A86 ? GO:0009416 ... O65890 38071196
    849 8jp3:A (2.73) BS01 A86 ? GO:0009416 ... B8BS67 39030906
    850 8jp3:A (2.73) BS02 A86 ? GO:0009416 ... B8BS67 39030906
    851 8jp3:A (2.73) BS03 A86 ? GO:0009416 ... B8BS67 39030906
    852 8jp3:A (2.73) BS04 A86 ? GO:0009416 ... B8BS67 39030906
    853 8jp3:A (2.73) BS05 A86 ? GO:0009416 ... B8BS67 39030906
    854 8jp3:A (2.73) BS06 A86 ? GO:0009416 ... B8BS67 39030906
    855 8jp3:A (2.73) BS07 A86 ? GO:0009416 ... B8BS67 39030906
    856 8jp3:A (2.73) BS19 A86 ? GO:0009416 ... B8BS67 39030906
    857 8jp3:B (2.73) BS01 A86 ? GO:0009416 ... B8BS67 39030906
    858 8jp3:B (2.73) BS03 A86 ? GO:0009416 ... B8BS67 39030906
    859 8jp3:B (2.73) BS04 A86 ? GO:0009416 ... B8BS67 39030906
    860 8jp3:B (2.73) BS05 A86 ? GO:0009416 ... B8BS67 39030906
    861 8jp3:B (2.73) BS06 A86 ? GO:0009416 ... B8BS67 39030906
    862 8jp3:B (2.73) BS07 A86 ? GO:0009416 ... B8BS67 39030906
    863 8jp3:B (2.73) BS08 A86 ? GO:0009416 ... B8BS67 39030906
    864 8jp3:B (2.73) BS09 A86 ? GO:0009416 ... B8BS67 39030906
    865 8jp3:C (2.73) BS01 A86 ? GO:0009416 ... B8BS67 39030906
    866 8jp3:C (2.73) BS03 A86 ? GO:0009416 ... B8BS67 39030906
    867 8jp3:C (2.73) BS04 A86 ? GO:0009416 ... B8BS67 39030906
    868 8jp3:C (2.73) BS05 A86 ? GO:0009416 ... B8BS67 39030906
    869 8jp3:C (2.73) BS06 A86 ? GO:0009416 ... B8BS67 39030906
    870 8jp3:C (2.73) BS07 A86 ? GO:0009416 ... B8BS67 39030906
    871 8jp3:C (2.73) BS08 A86 ? GO:0009416 ... B8BS67 39030906
    872 8jp3:C (2.73) BS09 A86 ? GO:0009416 ... B8BS67 39030906
    873 8w4o:5 (3.23) BS02 A86 ? GO:0009416 ... B5YLU3 38071196
    874 8w4o:6 (3.23) BS03 A86 ? GO:0009416 ... B8BX93 38071196
    875 8w4o:7 (3.23) BS01 A86 N/A GO:0009765 ... N/A 38071196
    876 8w4o:7 (3.23) BS02 A86 N/A GO:0009765 ... N/A 38071196
    877 8w4p:3 (3.48) BS01 A86 ? GO:0009416 ... B8BVI1 38071196
    878 8w4p:4 (3.48) BS01 A86 N/A N/A N/A 38071196
    879 8w4p:4 (3.48) BS02 A86 N/A N/A N/A 38071196
    880 8w4p:p (3.48) BS09 A86 ? GO:0009416 ... B8BUU4 38071196
    881 8wck:1 (2.71) BS01 A86 N/A N/A A0A679BXP6 39030906
    882 8wck:1 (2.71) BS02 A86 N/A N/A A0A679BXP6 39030906
    883 8wck:1 (2.71) BS03 A86 N/A N/A A0A679BXP6 39030906
    884 8wck:1 (2.71) BS04 A86 N/A N/A A0A679BXP6 39030906
    885 8wck:1 (2.71) BS05 A86 N/A N/A A0A679BXP6 39030906
    886 8wck:1 (2.71) BS06 A86 N/A N/A A0A679BXP6 39030906
    887 8wck:2 (2.71) BS02 A86 N/A N/A A0A679BXP6 39030906
    888 8wck:2 (2.71) BS03 A86 N/A N/A A0A679BXP6 39030906
    889 8wck:2 (2.71) BS04 A86 N/A N/A A0A679BXP6 39030906
    890 8wck:2 (2.71) BS05 A86 N/A N/A A0A679BXP6 39030906
    891 8wck:2 (2.71) BS06 A86 N/A N/A A0A679BXP6 39030906
    892 8wck:2 (2.71) BS07 A86 N/A N/A A0A679BXP6 39030906
    893 8wck:3 (2.71) BS02 A86 N/A N/A A0A679BXP6 39030906
    894 8wck:3 (2.71) BS03 A86 N/A N/A A0A679BXP6 39030906
    895 8wck:3 (2.71) BS04 A86 N/A N/A A0A679BXP6 39030906
    896 8wck:3 (2.71) BS05 A86 N/A N/A A0A679BXP6 39030906
    897 8wck:3 (2.71) BS06 A86 N/A N/A A0A679BXP6 39030906
    898 8wck:3 (2.71) BS07 A86 N/A N/A A0A679BXP6 39030906
    899 8wck:4 (2.71) BS03 A86 N/A N/A A0A679BXP6 39030906
    900 8wck:4 (2.71) BS04 A86 N/A N/A A0A679BXP6 39030906
    901 8wck:4 (2.71) BS05 A86 N/A N/A A0A679BXP6 39030906
    902 8wck:4 (2.71) BS06 A86 N/A N/A A0A679BXP6 39030906
    903 8wck:4 (2.71) BS07 A86 N/A N/A A0A679BXP6 39030906
    904 8wcl:5 (2.65) BS01 A86 N/A N/A N/A 39030906
    905 8wcl:5 (2.65) BS02 A86 N/A N/A N/A 39030906
    906 8wcl:5 (2.65) BS03 A86 N/A N/A N/A 39030906
    907 8wcl:5 (2.65) BS04 A86 N/A N/A N/A 39030906
    908 8wcl:5 (2.65) BS05 A86 N/A N/A N/A 39030906
    909 8wcl:5 (2.65) BS16 A86 N/A N/A N/A 39030906
    910 8wcl:5 (2.65) BS17 A86 N/A N/A N/A 39030906
    911 8wcl:6 (2.65) BS01 A86 N/A N/A N/A 39030906
    912 8wcl:6 (2.65) BS02 A86 N/A N/A N/A 39030906
    913 8wcl:6 (2.65) BS03 A86 N/A N/A N/A 39030906
    914 8wcl:6 (2.65) BS04 A86 N/A N/A N/A 39030906
    915 8wcl:6 (2.65) BS15 A86 N/A N/A N/A 39030906
    916 8wcl:6 (2.65) BS16 A86 N/A N/A N/A 39030906
    917 8wcl:7 (2.65) BS02 A86 N/A N/A N/A 39030906
    918 8wcl:7 (2.65) BS03 A86 N/A N/A N/A 39030906
    919 8wcl:7 (2.65) BS04 A86 N/A N/A N/A 39030906
    920 8wcl:7 (2.65) BS05 A86 N/A N/A N/A 39030906
    921 8wcl:7 (2.65) BS06 A86 N/A N/A N/A 39030906
    922 8wcl:7 (2.65) BS07 A86 N/A N/A N/A 39030906
    923 8wcl:8 (2.65) BS02 A86 N/A N/A N/A 39030906
    924 8wcl:8 (2.65) BS03 A86 N/A N/A N/A 39030906
    925 8wcl:8 (2.65) BS04 A86 N/A N/A N/A 39030906
    926 8wcl:8 (2.65) BS05 A86 N/A N/A N/A 39030906
    927 8wcl:8 (2.65) BS06 A86 N/A N/A N/A 39030906
    928 8wcl:8 (2.65) BS07 A86 N/A N/A N/A 39030906
    929 8wcl:8 (2.65) BS18 A86 N/A N/A N/A 39030906
    930 8wcl:9 (2.65) BS01 A86 N/A N/A N/A 39030906
    931 8wcl:9 (2.65) BS02 A86 N/A N/A N/A 39030906
    932 8wcl:9 (2.65) BS03 A86 N/A N/A N/A 39030906
    933 8wcl:9 (2.65) BS04 A86 N/A N/A N/A 39030906
    934 8wcl:9 (2.65) BS05 A86 N/A N/A N/A 39030906
    935 8wcl:9 (2.65) BS06 A86 N/A N/A N/A 39030906
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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