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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1fnc:A (2.0) BS02 A2P 1.18.1.2 GO:0016491 ... P00455 7897656
    2 1fnd:A (1.7) BS02 A2P 1.18.1.2 GO:0016491 ... P00455 7897656
    3 1h1h:A (2.0) BS01 A2P 3.1.27.- GO:0001530 ... P12724 12356310 MOAD: Ki~6.5uM
    PDBbind: -logKd/Ki=5.22, Ki=6uM
    4 1hi3:A (1.8) BS01 A2P 4.6.1.18 GO:0001530 ... P10153 11154698 MOAD: Ki=64uM
    PDBbind: -logKd/Ki=4.19, Ki=64uM
    5 1o0o:A (1.2) BS01 A2P 4.6.1.18 GO:0003676 ... P61823 14573867 MOAD: Ki=8uM
    PDBbind: -logKd/Ki=5.10, Ki=8uM
    6 1o0o:B (1.2) BS01 A2P 4.6.1.18 GO:0003676 ... P61823 14573867 MOAD: Ki=8uM
    7 2gz2:A (2.1) BS01 A2P 1.2.1.11 GO:0000166 ... A0A0H2UPS5 16895909 MOAD: Kd=6uM
    PDBbind: -logKd/Ki=5.22, Kd=6.0uM
    8 2gz2:B (2.1) BS01 A2P 1.2.1.11 GO:0000166 ... A0A0H2UPS5 16895909 MOAD: Kd=6uM
    9 2iyp:B (2.79) BS02 A2P 1.1.1.44 GO:0004616 ... P96789 17222187
    10 2iyp:C (2.79) BS01 A2P 1.1.1.44 GO:0004616 ... P96789 17222187
    11 2ok7:A (2.7) BS02 A2P 1.18.1.2 GO:0016491 ... C6KT68 17258767
    12 2ok7:B (2.7) BS01 A2P 1.18.1.2 GO:0016491 ... C6KT68 17258767
    13 2ok7:B (2.7) BS03 A2P 1.18.1.2 GO:0016491 ... C6KT68 17258767
    14 2ok7:C (2.7) BS02 A2P 1.18.1.2 GO:0016491 ... C6KT68 17258767
    15 2ok7:C (2.7) BS03 A2P 1.18.1.2 GO:0016491 ... C6KT68 17258767
    16 2ok7:D (2.7) BS01 A2P 1.18.1.2 GO:0016491 ... C6KT68 17258767
    17 2ok7:D (2.7) BS03 A2P 1.18.1.2 GO:0016491 ... C6KT68 17258767
    18 2ok7:E (2.7) BS02 A2P 1.18.1.2 GO:0016491 ... C6KT68 17258767
    19 2ok7:E (2.7) BS03 A2P 1.18.1.2 GO:0016491 ... C6KT68 17258767
    20 2ok7:F (2.7) BS02 A2P 1.18.1.2 GO:0016491 ... C6KT68 17258767
    21 2vni:A (2.24) BS02 A2P 1.18.1.2
    1.19.1.1    		 GO:0000166 ... Q9L6V3 18973834 MOAD: Kd=204uM
    22 3jqp:A (3.0) BS02 A2P 1.18.1.2 GO:0016491 ... C6KT68 19736991
    23 3jqp:B (3.0) BS01 A2P 1.18.1.2 GO:0016491 ... C6KT68 19736991
    24 3jqp:B (3.0) BS03 A2P 1.18.1.2 GO:0016491 ... C6KT68 19736991
    25 3jqp:C (3.0) BS02 A2P 1.18.1.2 GO:0016491 ... C6KT68 19736991
    26 3jqp:C (3.0) BS03 A2P 1.18.1.2 GO:0016491 ... C6KT68 19736991
    27 3jqp:D (3.0) BS01 A2P 1.18.1.2 GO:0016491 ... C6KT68 19736991
    28 3jqp:D (3.0) BS03 A2P 1.18.1.2 GO:0016491 ... C6KT68 19736991
    29 3jqp:E (3.0) BS02 A2P 1.18.1.2 GO:0016491 ... C6KT68 19736991
    30 3jqp:E (3.0) BS03 A2P 1.18.1.2 GO:0016491 ... C6KT68 19736991
    31 3jqp:F (3.0) BS01 A2P 1.18.1.2 GO:0016491 ... C6KT68 19736991
    32 3jqp:F (3.0) BS03 A2P 1.18.1.2 GO:0016491 ... C6KT68 19736991
    33 3jqq:A (2.2) BS02 A2P 1.18.1.2 GO:0016491 ... C6KT68 19736991 MOAD: Ki=2.9uM
    34 3jqq:B (2.2) BS02 A2P 1.18.1.2 GO:0016491 ... C6KT68 19736991 MOAD: Ki=2.9uM
    35 3jqq:C (2.2) BS02 A2P 1.18.1.2 GO:0016491 ... C6KT68 19736991 MOAD: Ki=2.9uM
    36 3jqq:C (2.2) BS03 A2P 1.18.1.2 GO:0016491 ... C6KT68 19736991 MOAD: Ki=2.9uM
    37 3jqq:D (2.2) BS02 A2P 1.18.1.2 GO:0016491 ... C6KT68 19736991 MOAD: Ki=2.9uM
    38 3jqq:E (2.2) BS02 A2P 1.18.1.2 GO:0016491 ... C6KT68 19736991 MOAD: Ki=2.9uM
    39 3jqq:F (2.2) BS01 A2P 1.18.1.2 GO:0016491 ... C6KT68 19736991 MOAD: Ki=2.9uM
    40 3jqq:F (2.2) BS03 A2P 1.18.1.2 GO:0016491 ... C6KT68 19736991 MOAD: Ki=2.9uM
    41 3pws:A (2.0) BS02 A2P N/A GO:0004073 ... N/A 22039970
    42 3pws:B (2.0) BS02 A2P N/A GO:0004073 ... N/A 22039970
    43 4ajc:A (2.3) BS01 A2P 1.1.1.42 GO:0000287 ... P08200 22891681
    44 4ajs:A (1.802) BS01 A2P 1.1.1.42 GO:0000287 ... P08200 22891681
    45 4r3w:A (1.91) BS02 A2P N/A GO:0004073 ... N/A 25478842 MOAD: Ki=1mM
    PDBbind: -logKd/Ki=3.00, Ki=1.0mM
    46 4r3w:B (1.91) BS01 A2P N/A GO:0004073 ... N/A 25478842 MOAD: Ki=1mM
    47 4wdf:A (2.0) BS01 A2P 3.1.4.37 GO:0004113 ... P16330 26563764
    48 4wdg:A (2.05) BS01 A2P 3.1.4.37 GO:0004113 ... P16330 26563764
    49 4ye2:A (3.098) BS01 A2P 2.1.1.56
    2.7.7.50
    3.1.4.-    		 N/A B3F2X4 25878106
    50 5jh2:A (1.72) BS01 A2P ? GO:0004032 ... A2T1W7 27154221
    51 6o0w:A (1.75) BS01 A2P 3.2.2.-
    3.2.2.6    		 GO:0007165 ... V9M398 31439792
    52 6ql9:A (2.82) BS01 A2P 1.1.1.100
    2.3.1.41
    2.3.1.86    		 GO:0000287 ... P19097 32160528
    53 6ql9:B (2.82) BS01 A2P 1.1.1.100
    2.3.1.41
    2.3.1.86    		 GO:0000287 ... P19097 32160528
    54 6ql9:C (2.82) BS01 A2P 1.1.1.100
    2.3.1.41
    2.3.1.86    		 GO:0000287 ... P19097 32160528
    55 6ql9:D (2.82) BS02 A2P 1.1.1.100
    2.3.1.41
    2.3.1.86    		 GO:0000287 ... P19097 32160528
    56 6ql9:E (2.82) BS02 A2P 1.1.1.100
    2.3.1.41
    2.3.1.86    		 GO:0000287 ... P19097 32160528
    57 6ql9:F (2.82) BS02 A2P 1.1.1.100
    2.3.1.41
    2.3.1.86    		 GO:0000287 ... P19097 32160528
    58 8jus:A (1.73) BS01 A2P N/A GO:0004073 ... A0AAF0BGE9 N/A
    59 8jus:B (1.73) BS01 A2P N/A GO:0004073 ... A0AAF0BGE9 N/A
    60 8tfx:A (1.7) BS01 A2P 2.7.1.- GO:0000215 ... O57899 37883434
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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