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BioLiP
Download all results in tab-seperated text for 160 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1bkx:A (2.6) BS01 A 2.7.11.11 GO:0000122 ... P05132 9261084
    2 1cvj:H (2.6) BS02 A ? GO:0003676 ... P11940 10499800
    3 1exd:A (2.7) BS03 A 6.1.1.18 GO:0000166 ... P00962 10881199
    4 3fit:A (2.4) BS02 A 2.7.7.51
    3.6.1.29
    3.6.2.1
    3.9.1.-    		 GO:0000166 ... P49789 9261067
    5 3ra8:A (2.7) BS01 A ? GO:0005198 ... Q8JQF8 21900159
    6 3raa:A (3.2) BS01 A ? GO:0005198 ... Q8JQF8 21900159
    7 4k9a:A (2.264) BS05 A 2.7.7.86 N/A Q8C6L5 23647843
    8 4k9b:A (2.26) BS05 A 2.7.7.86 N/A Q8C6L5 23647843
    9 4m30:A (2.501) BS05 A 3.1.26.3 GO:0003723 ... O67082 24274754
    10 4m30:A (2.501) BS06 A 3.1.26.3 GO:0003723 ... O67082 24274754
    11 4m30:B (2.501) BS05 A 3.1.26.3 GO:0003723 ... O67082 24274754
    12 4m30:B (2.501) BS06 A 3.1.26.3 GO:0003723 ... O67082 24274754
    13 4u3n:q2 (3.2) BS02 A ? GO:0002181 ... P0CX27 25209664
    14 5gtd:A (2.69) BS01 A 6.2.1.26 GO:0005524 ... P23971 27933791
    15 5gtd:B (2.69) BS01 A 6.2.1.26 GO:0005524 ... P23971 27933791
    16 5o4z:A (1.7) BS01 A ? GO:0000166 ... Q9X1T1 29107484 PDBbind: -logKd/Ki=6.07, Kd=860nM
    17 5o4z:A (1.7) BS02 A ? GO:0000166 ... Q9X1T1 29107484 PDBbind: -logKd/Ki=6.07, Kd=860nM
    18 5xsp:A (2.146) BS03 A 3.1.4.- GO:0003676 ... A0A0U1MUE2 29203646
    19 5xsp:A (2.146) BS04 A 3.1.4.- GO:0003676 ... A0A0U1MUE2 29203646
    20 5xsp:B (2.146) BS03 A 3.1.4.- GO:0003676 ... A0A0U1MUE2 29203646
    21 6aek:A (1.8) BS01 A 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P06802 30356045
    22 6nmm:A (2.5) BS02 A ? GO:0000166 ... Q57514 N/A
    23 6nmm:A (2.5) BS06 A ? GO:0000166 ... Q57514 N/A
    24 6nmm:B (2.5) BS02 A ? GO:0000166 ... Q57514 N/A
    25 6nmm:C (2.5) BS01 A ? GO:0000166 ... Q57514 N/A
    26 6nmm:C (2.5) BS03 A ? GO:0000166 ... Q57514 N/A
    27 6nmm:C (2.5) BS07 A ? GO:0000166 ... Q57514 N/A
    28 6nmm:D (2.5) BS02 A ? GO:0000166 ... Q57514 N/A
    29 6nmn:A (1.8) BS02 A ? GO:0000166 ... Q57514 N/A
    30 6nmn:A (1.8) BS05 A ? GO:0000166 ... Q57514 N/A
    31 6nmn:B (1.8) BS01 A ? GO:0000166 ... Q57514 N/A
    32 6nmn:B (1.8) BS03 A ? GO:0000166 ... Q57514 N/A
    33 7bum:A (3.047) BS02 A 2.7.7.86 GO:0002218 ... Q8C6L5 32814054
    34 7bum:B (3.047) BS02 A 2.7.7.86 GO:0002218 ... Q8C6L5 32814054
    35 7kl3:A (1.99) BS02 A ? GO:0003723 ... A0A5J6VBC3 33469660
    36 7pd3:E (3.4) BS03 A ? GO:0003723 ... P09001 34609277
    37 7pd3:E (3.4) BS07 A ? GO:0003723 ... P09001 34609277
    38 7pd3:E (3.4) BS13 A ? GO:0003723 ... P09001 34609277
    39 7pd3:E (3.4) BS17 A ? GO:0003723 ... P09001 34609277
    40 7pd3:E (3.4) BS18 A ? GO:0003723 ... P09001 34609277
    41 7pd3:E (3.4) BS19 A ? GO:0003723 ... P09001 34609277
    42 7pd3:L (3.4) BS02 A ? GO:0003723 ... Q6P1L8 34609277
    43 7pd3:O (3.4) BS02 A ? GO:0003735 ... Q9NRX2 34609277
    44 7pd3:r (3.4) BS02 A ? GO:0003735 ... Q9NVS2 34609277
    45 7pd3:r (3.4) BS04 A ? GO:0003735 ... Q9NVS2 34609277
    46 7pd3:r (3.4) BS06 A ? GO:0003735 ... Q9NVS2 34609277
    47 7pd3:r (3.4) BS07 A ? GO:0003735 ... Q9NVS2 34609277
    48 7v0w:A (2.66) BS07 A 2.7.7.86 N/A Q8C6L5 N/A
    49 7v0w:C (2.66) BS07 A 2.7.7.86 N/A Q8C6L5 N/A
    50 8evr:BA (2.87) BS02 A ? GO:0000028 ... P32905 37595043
    51 8evr:BD (2.87) BS02 A ? GO:0003723 ... N/A 37595043
    52 8evr:BD (2.87) BS10 A ? GO:0003723 ... N/A 37595043
    53 8evr:BF (2.87) BS03 A ? GO:0000028 ... A0A1L4AA68 37595043
    54 8evr:BF (2.87) BS10 A ? GO:0000028 ... A0A1L4AA68 37595043
    55 8evr:BG (2.87) BS02 A ? GO:0000462 ... P0CX37 37595043
    56 8evr:BI (2.87) BS04 A ? GO:0000462 ... P0CX39 37595043
    57 8evr:BK (2.87) BS01 A ? GO:0000054 ... Q08745 37595043
    58 8evr:BK (2.87) BS02 A ? GO:0000054 ... Q08745 37595043
    59 8evr:BM (2.87) BS01 A ? GO:0003735 ... N/A 37595043
    60 8evr:BP (2.87) BS02 A ? GO:0003723 ... N/A 37595043
    61 8evr:BP (2.87) BS09 A ? GO:0003723 ... N/A 37595043
    62 8evr:BP (2.87) BS10 A ? GO:0003723 ... N/A 37595043
    63 8evr:BQ (2.87) BS05 A ? GO:0000462 ... P0CX51 37595043
    64 8evr:BQ (2.87) BS06 A ? GO:0000462 ... P0CX51 37595043
    65 8evr:BQ (2.87) BS08 A ? GO:0000462 ... P0CX51 37595043
    66 8evr:BQ (2.87) BS11 A ? GO:0000462 ... P0CX51 37595043
    67 8evr:BS (2.87) BS04 A ? GO:0000054 ... P0CX55 37595043
    68 8evr:BS (2.87) BS06 A ? GO:0000054 ... P0CX55 37595043
    69 8evr:BS (2.87) BS08 A ? GO:0000054 ... P0CX55 37595043
    70 8evr:BT (2.87) BS01 A ? GO:0000028 ... P07280 37595043
    71 8evr:BT (2.87) BS04 A ? GO:0000028 ... P07280 37595043
    72 8evr:BT (2.87) BS08 A ? GO:0000028 ... P07280 37595043
    73 8evr:BU (2.87) BS02 A ? GO:0003723 ... N/A 37595043
    74 8evr:BU (2.87) BS05 A ? GO:0003723 ... N/A 37595043
    75 8evr:BU (2.87) BS09 A ? GO:0003723 ... N/A 37595043
    76 8evr:BU (2.87) BS13 A ? GO:0003723 ... N/A 37595043
    77 8evr:Ba (2.87) BS02 A ? GO:0003735 ... N/A 37595043
    78 8evr:Ba (2.87) BS04 A ? GO:0003735 ... N/A 37595043
    79 8evr:Ba (2.87) BS07 A ? GO:0003735 ... N/A 37595043
    80 8evr:Ba (2.87) BS09 A ? GO:0003735 ... N/A 37595043
    81 8evr:Bd (2.87) BS03 A ? GO:0003735 ... N/A 37595043
    82 8evr:Bd (2.87) BS08 A ? GO:0003735 ... N/A 37595043
    83 8evr:Bd (2.87) BS11 A ? GO:0003735 ... N/A 37595043
    84 8evr:Bf (2.87) BS02 A ? GO:0003735 ... N/A 37595043
    85 8evr:Bf (2.87) BS09 A ? GO:0003735 ... N/A 37595043
    86 8evr:Bg (2.87) BS01 A ? GO:0001965 ... P38011 37595043
    87 8evs:BA (2.62) BS01 A ? GO:0000028 ... P32905 37595043
    88 8evs:BD (2.62) BS05 A ? GO:0003723 ... N/A 37595043
    89 8evs:BD (2.62) BS10 A ? GO:0003723 ... N/A 37595043
    90 8evs:BF (2.62) BS03 A ? GO:0000028 ... A0A1L4AA68 37595043
    91 8evs:BF (2.62) BS08 A ? GO:0000028 ... A0A1L4AA68 37595043
    92 8evs:BF (2.62) BS11 A ? GO:0000028 ... A0A1L4AA68 37595043
    93 8evs:BF (2.62) BS13 A ? GO:0000028 ... A0A1L4AA68 37595043
    94 8evs:BG (2.62) BS02 A ? GO:0000462 ... P0CX37 37595043
    95 8evs:BI (2.62) BS04 A ? GO:0000462 ... P0CX39 37595043
    96 8evs:BK (2.62) BS01 A ? GO:0000054 ... Q08745 37595043
    97 8evs:BK (2.62) BS02 A ? GO:0000054 ... Q08745 37595043
    98 8evs:BM (2.62) BS05 A ? GO:0003735 ... N/A 37595043
    99 8evs:BP (2.62) BS03 A ? GO:0003723 ... N/A 37595043
    100 8evs:BP (2.62) BS10 A ? GO:0003723 ... N/A 37595043
    101 8evs:BQ (2.62) BS03 A ? GO:0000462 ... P0CX51 37595043
    102 8evs:BQ (2.62) BS05 A ? GO:0000462 ... P0CX51 37595043
    103 8evs:BQ (2.62) BS08 A ? GO:0000462 ... P0CX51 37595043
    104 8evs:BR (2.62) BS07 A ? GO:0000028 ... P02407 37595043
    105 8evs:BS (2.62) BS04 A ? GO:0000054 ... P0CX55 37595043
    106 8evs:BS (2.62) BS06 A ? GO:0000054 ... P0CX55 37595043
    107 8evs:BS (2.62) BS09 A ? GO:0000054 ... P0CX55 37595043
    108 8evs:BT (2.62) BS03 A ? GO:0000028 ... P07280 37595043
    109 8evs:BT (2.62) BS07 A ? GO:0000028 ... P07280 37595043
    110 8evs:BU (2.62) BS02 A ? GO:0003723 ... N/A 37595043
    111 8evs:BU (2.62) BS04 A ? GO:0003723 ... N/A 37595043
    112 8evs:BU (2.62) BS07 A ? GO:0003723 ... N/A 37595043
    113 8evs:BU (2.62) BS09 A ? GO:0003723 ... N/A 37595043
    114 8evs:Ba (2.62) BS02 A ? GO:0003735 ... N/A 37595043
    115 8evs:Ba (2.62) BS04 A ? GO:0003735 ... N/A 37595043
    116 8evs:Ba (2.62) BS07 A ? GO:0003735 ... N/A 37595043
    117 8evs:Bd (2.62) BS03 A ? GO:0003735 ... N/A 37595043
    118 8evs:Bd (2.62) BS10 A ? GO:0003735 ... N/A 37595043
    119 8evs:Bf (2.62) BS06 A ? GO:0003735 ... N/A 37595043
    120 8evs:Bg (2.62) BS02 A ? GO:0001965 ... P38011 37595043
    121 8evt:BA (2.2) BS02 A ? GO:0000028 ... P32905 37595043
    122 8evt:BC (2.2) BS04 A ? GO:0003723 ... N/A 37595043
    123 8evt:BC (2.2) BS05 A ? GO:0003723 ... N/A 37595043
    124 8evt:BD (2.2) BS01 A ? GO:0003723 ... N/A 37595043
    125 8evt:BD (2.2) BS06 A ? GO:0003723 ... N/A 37595043
    126 8evt:BD (2.2) BS10 A ? GO:0003723 ... N/A 37595043
    127 8evt:BF (2.2) BS03 A ? GO:0000028 ... A0A1L4AA68 37595043
    128 8evt:BF (2.2) BS08 A ? GO:0000028 ... A0A1L4AA68 37595043
    129 8evt:BF (2.2) BS10 A ? GO:0000028 ... A0A1L4AA68 37595043
    130 8evt:BG (2.2) BS02 A ? GO:0000462 ... P0CX37 37595043
    131 8evt:BI (2.2) BS05 A ? GO:0000462 ... P0CX39 37595043
    132 8evt:BI (2.2) BS06 A ? GO:0000462 ... P0CX39 37595043
    133 8evt:BK (2.2) BS01 A ? GO:0000054 ... Q08745 37595043
    134 8evt:BK (2.2) BS02 A ? GO:0000054 ... Q08745 37595043
    135 8evt:BM (2.2) BS01 A ? GO:0003735 ... N/A 37595043
    136 8evt:BP (2.2) BS09 A ? GO:0003723 ... N/A 37595043
    137 8evt:BP (2.2) BS10 A ? GO:0003723 ... N/A 37595043
    138 8evt:BQ (2.2) BS06 A ? GO:0000462 ... P0CX51 37595043
    139 8evt:BQ (2.2) BS07 A ? GO:0000462 ... P0CX51 37595043
    140 8evt:BQ (2.2) BS09 A ? GO:0000462 ... P0CX51 37595043
    141 8evt:BQ (2.2) BS12 A ? GO:0000462 ... P0CX51 37595043
    142 8evt:BR (2.2) BS07 A ? GO:0000028 ... P02407 37595043
    143 8evt:BS (2.2) BS05 A ? GO:0000054 ... P0CX55 37595043
    144 8evt:BS (2.2) BS07 A ? GO:0000054 ... P0CX55 37595043
    145 8evt:BS (2.2) BS08 A ? GO:0000054 ... P0CX55 37595043
    146 8evt:BT (2.2) BS01 A ? GO:0000028 ... P07280 37595043
    147 8evt:BT (2.2) BS04 A ? GO:0000028 ... P07280 37595043
    148 8evt:BT (2.2) BS13 A ? GO:0000028 ... P07280 37595043
    149 8evt:BT (2.2) BS14 A ? GO:0000028 ... P07280 37595043
    150 8evt:BU (2.2) BS05 A ? GO:0003723 ... N/A 37595043
    151 8evt:BU (2.2) BS09 A ? GO:0003723 ... N/A 37595043
    152 8evt:BU (2.2) BS10 A ? GO:0003723 ... N/A 37595043
    153 8evt:Ba (2.2) BS02 A ? GO:0003735 ... N/A 37595043
    154 8evt:Ba (2.2) BS04 A ? GO:0003735 ... N/A 37595043
    155 8evt:Ba (2.2) BS07 A ? GO:0003735 ... N/A 37595043
    156 8evt:Bd (2.2) BS02 A ? GO:0003735 ... N/A 37595043
    157 8evt:Bd (2.2) BS10 A ? GO:0003735 ... N/A 37595043
    158 8evt:Bg (2.2) BS02 A ? GO:0001965 ... P38011 37595043
    159 8gs2:A (2.84) BS04 A ? GO:0051607 ... A0A401FT36 36423304
    160 8gs2:B (2.84) BS01 A ? N/A A0A401FT52 36423304
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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