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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 142 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5w3k:A (1.589) BS01 9TY 1.1.1.86 GO:0000287 ... Q2FWK4 28975665 MOAD: Ki=2.73uM
    2 5w3k:A (1.589) BS05 9TY 1.1.1.86 GO:0000287 ... Q2FWK4 28975665 MOAD: Ki=2.73uM
    3 5w3k:B (1.589) BS01 9TY 1.1.1.86 GO:0000287 ... Q2FWK4 28975665 MOAD: Ki=2.73uM
    4 5w3k:B (1.589) BS03 9TY 1.1.1.86 GO:0000287 ... Q2FWK4 28975665 MOAD: Ki=2.73uM
    5 6jcz:A (3.35) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    6 6jcz:B (3.35) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    7 6jcz:C (3.35) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    8 6jcz:D (3.35) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    9 6jcz:E (3.35) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    10 6jcz:F (3.35) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    11 6jcz:G (3.35) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    12 6jcz:H (3.35) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    13 6jcz:I (3.35) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    14 6jcz:J (3.35) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    15 6jcz:K (3.35) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    16 6jcz:L (3.35) BS01 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    17 6jd1:A (3.38) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    18 6jd1:B (3.38) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    19 6jd1:C (3.38) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    20 6jd1:D (3.38) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    21 6jd1:E (3.38) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    22 6jd1:F (3.38) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    23 6jd1:G (3.38) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    24 6jd1:H (3.38) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    25 6jd1:I (3.38) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    26 6jd1:J (3.38) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    27 6jd1:K (3.38) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    28 6jd1:L (3.38) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    29 6kpa:A (2.75) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    30 6kpa:B (2.75) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    31 6kpa:C (2.75) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    32 6kpa:D (2.75) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    33 6kpa:E (2.75) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    34 6kpa:F (2.75) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    35 6kpa:G (2.75) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    36 6kpa:H (2.75) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    37 6kpa:I (2.75) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    38 6kpa:J (2.75) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    39 6kpa:K (2.75) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    40 6kpa:L (2.75) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    41 6kph:A (2.41) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    42 6kph:A (2.41) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    43 6kph:B (2.41) BS01 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    44 6kph:B (2.41) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    45 6kph:C (2.41) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    46 6kph:C (2.41) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    47 6kph:D (2.41) BS01 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    48 6kph:D (2.41) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    49 6kph:E (2.41) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    50 6kph:E (2.41) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    51 6kph:F (2.41) BS01 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    52 6kph:F (2.41) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    53 6kph:G (2.41) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    54 6kph:G (2.41) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    55 6kph:H (2.41) BS01 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    56 6kph:H (2.41) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    57 6kph:I (2.41) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    58 6kph:I (2.41) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    59 6kph:J (2.41) BS02 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    60 6kph:J (2.41) BS05 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    61 6kph:K (2.41) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    62 6kph:K (2.41) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    63 6kph:L (2.41) BS01 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    64 6kph:L (2.41) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    65 6kpj:A (2.56) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    66 6kpj:B (2.56) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    67 6kpj:C (2.56) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    68 6kpj:D (2.56) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    69 6kpj:E (2.56) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    70 6kpj:F (2.56) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    71 6kpj:G (2.56) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    72 6kpj:H (2.56) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    73 6kpj:I (2.56) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    74 6kpj:J (2.56) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    75 6kpj:K (2.56) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    76 6kpj:L (2.56) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    77 6kqj:A (2.54) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    78 6kqj:B (2.54) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    79 6kqj:C (2.54) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    80 6kqj:D (2.54) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    81 6kqj:E (2.54) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    82 6kqj:E (2.54) BS05 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    83 6kqj:F (2.54) BS01 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    84 6kqj:F (2.54) BS05 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    85 6kqj:G (2.54) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    86 6kqj:H (2.54) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    87 6kqj:I (2.54) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    88 6kqj:J (2.54) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    89 6kqj:K (2.54) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    90 6kqj:K (2.54) BS05 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    91 6kqj:L (2.54) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    92 6kqk:A (2.17) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    93 6kqk:A (2.17) BS05 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    94 6kqk:B (2.17) BS01 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    95 6kqk:B (2.17) BS05 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    96 6kqk:C (2.17) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    97 6kqk:C (2.17) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    98 6kqk:D (2.17) BS01 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    99 6kqk:D (2.17) BS05 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    100 6kqk:E (2.17) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    101 6kqk:E (2.17) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    102 6kqk:F (2.17) BS01 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    103 6kqk:F (2.17) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    104 6kqk:G (2.17) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    105 6kqk:G (2.17) BS05 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    106 6kqk:H (2.17) BS01 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    107 6kqk:H (2.17) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    108 6kqk:I (2.17) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    109 6kqk:I (2.17) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    110 6kqk:J (2.17) BS01 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    111 6kqk:J (2.17) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    112 6kqk:K (2.17) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    113 6kqk:K (2.17) BS05 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    114 6kqk:L (2.17) BS01 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    115 6kqk:L (2.17) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    116 6kqo:A (2.52) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    117 6kqo:A (2.52) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    118 6kqo:B (2.52) BS01 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    119 6kqo:B (2.52) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    120 6kqo:C (2.52) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    121 6kqo:D (2.52) BS01 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    122 6kqo:D (2.52) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    123 6kqo:E (2.52) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    124 6kqo:E (2.52) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    125 6kqo:F (2.52) BS01 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    126 6kqo:F (2.52) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    127 6kqo:G (2.52) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    128 6kqo:G (2.52) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    129 6kqo:H (2.52) BS01 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    130 6kqo:H (2.52) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    131 6kqo:I (2.52) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    132 6kqo:I (2.52) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    133 6kqo:J (2.52) BS01 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    134 6kqo:J (2.52) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    135 6kqo:K (2.52) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    136 6kqo:K (2.52) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    137 6kqo:L (2.52) BS01 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    138 6kqo:L (2.52) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    139 7pcg:A (1.9) BS03 9TY 1.1.1.86 GO:0000166 ... Q2T3G7 35906404
    140 7pcg:A (1.9) BS04 9TY 1.1.1.86 GO:0000166 ... Q2T3G7 35906404
    141 7pcg:B (1.9) BS01 9TY 1.1.1.86 GO:0000166 ... Q2T3G7 35906404
    142 7pcg:B (1.9) BS02 9TY 1.1.1.86 GO:0000166 ... Q2T3G7 35906404
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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