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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5o40:A (1.5) BS03 9JT 1.15.1.1 GO:0000302 ... P00441 29703933
    2 5o40:F (1.5) BS03 9JT 1.15.1.1 GO:0000302 ... P00441 29703933
    3 6rrm:A (1.64) BS01 9JT 2.3.2.- GO:0005886 ... I6Y9J2 31380528 PDBbind: -logKd/Ki=6.84, IC50=0.143uM
    4 6rrm:B (1.64) BS01 9JT 2.3.2.- GO:0005886 ... I6Y9J2 31380528
    5 6sph:A (2.25) BS02 9JT 1.15.1.1 GO:0000302 ... P00441 32139772
    6 6sph:C (2.25) BS02 9JT 1.15.1.1 GO:0000302 ... P00441 32139772
    7 6sph:G (2.25) BS02 9JT 1.15.1.1 GO:0000302 ... P00441 32139772
    8 6sph:J (2.25) BS02 9JT 1.15.1.1 GO:0000302 ... P00441 32139772
    9 6sph:L (2.25) BS02 9JT 1.15.1.1 GO:0000302 ... P00441 32139772
    10 6z4g:AAA (1.45) BS02 9JT 1.15.1.1 GO:0000302 ... P00441 32862101
    11 6z4g:BBB (1.45) BS02 9JT 1.15.1.1 GO:0000302 ... P00441 32862101
    12 6zk0:AAA (1.47) BS02 9JT 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 33006574
    13 6zk0:BBB (1.47) BS03 9JT 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 33006574
    14 7b6p:A (1.68) BS01 9JT 6.3.2.13 GO:0000287 ... P22188 N/A
    15 7b6p:B (1.68) BS01 9JT 6.3.2.13 GO:0000287 ... P22188 N/A
    16 7bfb:A (2.05) BS01 9JT 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    17 7bfb:A (2.05) BS02 9JT 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    18 7bfb:B (2.05) BS01 9JT 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    19 7bfb:B (2.05) BS02 9JT 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    20 7m1y:A (2.02) BS01 9JT 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 N/A
    21 7m1y:B (2.02) BS01 9JT 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 N/A
    22 7pcu:A (2.65) BS01 9JT ? GO:0003723 ... Q9BYJ9 36268123
    23 7pcu:B (2.65) BS01 9JT ? GO:0003723 ... Q9BYJ9 36268123
    24 7t8f:A (1.4) BS02 9JT 1.15.1.1 GO:0000302 ... P00441 38802492
    25 7t8f:F (1.4) BS02 9JT 1.15.1.1 GO:0000302 ... P00441 38802492
    26 8ejx:A (1.65) BS01 9JT 5.2.1.8 GO:0000413 ... P30405 38146639
    27 8gmi:A (2.7) BS01 9JT 2.3.3.16 GO:0004108 ... P9WPD3 37252106
    28 8gmi:B (2.7) BS02 9JT 2.3.3.16 GO:0004108 ... P9WPD3 37252106
    29 8gmi:C (2.7) BS02 9JT 2.3.3.16 GO:0004108 ... P9WPD3 37252106
    30 8gmi:D (2.7) BS02 9JT 2.3.3.16 GO:0004108 ... P9WPD3 37252106
    31 8gmi:E (2.7) BS02 9JT 2.3.3.16 GO:0004108 ... P9WPD3 37252106
    32 8gmi:F (2.7) BS02 9JT 2.3.3.16 GO:0004108 ... P9WPD3 37252106
    33 8gmi:G (2.7) BS01 9JT 2.3.3.16 GO:0004108 ... P9WPD3 37252106
    34 8gmi:H (2.7) BS01 9JT 2.3.3.16 GO:0004108 ... P9WPD3 37252106
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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