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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6zkk:4 (3.7) BS01 970 N/A GO:0016651 ... N/A 32972993
    2 6zkk:6 (3.7) BS01 970 N/A GO:0008137 ... N/A 32972993
    3 6zkl:4 (3.1) BS01 970 N/A GO:0016651 ... N/A 32972993
    4 6zkl:6 (3.1) BS01 970 N/A GO:0008137 ... N/A 32972993
    5 6zkl:6 (3.1) BS03 970 N/A GO:0008137 ... N/A 32972993
    6 6zkl:H (3.1) BS01 970 7.1.1.2 GO:0003954 ... O78747 32972993
    7 6zkm:4 (2.8) BS01 970 N/A GO:0016651 ... N/A 32972993
    8 6zkm:6 (2.8) BS01 970 N/A GO:0008137 ... N/A 32972993
    9 6zkm:6 (2.8) BS03 970 N/A GO:0008137 ... N/A 32972993
    10 6zkm:H (2.8) BS01 970 7.1.1.2 GO:0003954 ... O78747 32972993
    11 6zkm:M (2.8) BS02 970 7.1.1.2 GO:0003954 ... O78755 32972993
    12 6zkm:N (2.8) BS02 970 7.1.1.2 GO:0005739 ... O78748 32972993
    13 6zkn:4 (2.9) BS01 970 N/A GO:0016651 ... N/A 32972993
    14 6zkn:6 (2.9) BS01 970 N/A GO:0008137 ... N/A 32972993
    15 6zkn:6 (2.9) BS03 970 N/A GO:0008137 ... N/A 32972993
    16 6zkn:H (2.9) BS01 970 7.1.1.2 GO:0003954 ... O78747 32972993
    17 6zkn:M (2.9) BS02 970 7.1.1.2 GO:0003954 ... O78755 32972993
    18 6zkn:N (2.9) BS02 970 7.1.1.2 GO:0005739 ... O78748 32972993
    19 7v31:C (2.9) BS03 970 ? GO:0008137 ... A0A8D1TL60 35145322
    20 7v31:Q (2.9) BS02 970 ? GO:0003954 ... F1S1A8 35145322
    21 7v33:C (2.6) BS03 970 ? GO:0008137 ... A0A8D1TL60 35145322
    22 7v33:Q (2.6) BS02 970 ? GO:0003954 ... F1S1A8 35145322
    23 7vbz:C (2.4) BS03 970 ? GO:0008137 ... A0A8D1TL60 35145322
    24 7vbz:Q (2.4) BS03 970 ? GO:0016651 ... F1S1A8 35145322
    25 7vyf:C (2.8) BS02 970 ? GO:0008137 ... A0A8D1TL60 35145322
    26 7vyf:Q (2.8) BS03 970 ? GO:0016651 ... F1S1A8 35145322
    27 7w1t:C (3.0) BS02 970 ? GO:0008137 ... A0A8D1TL60 35145322
    28 7w1t:Q (3.0) BS02 970 ? GO:0003954 ... F1S1A8 35145322
    29 7w1u:C (3.2) BS03 970 ? GO:0008137 ... A0A8D1TL60 35145322
    30 7w1u:Q (3.2) BS02 970 ? GO:0003954 ... F1S1A8 35145322
    31 7w1v:C (3.0) BS03 970 ? GO:0008137 ... A0A8D1TL60 35145322
    32 7w1v:Q (3.0) BS02 970 ? GO:0003954 ... F1S1A8 35145322
    33 7w1z:C (2.6) BS04 970 ? GO:0008137 ... A0A8D1TL60 35145322
    34 7w1z:Q (2.6) BS02 970 ? GO:0003954 ... F1S1A8 35145322
    35 7w20:C (3.0) BS03 970 ? GO:0008137 ... A0A8D1TL60 35145322
    36 7w20:Q (3.0) BS02 970 ? GO:0003954 ... F1S1A8 35145322
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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