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BioLiP
Download all results in tab-seperated text for 40 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5uqg:A (2.03) BS02 8L4 N/A GO:0003824 ... N/A N/A
    2 5uqg:A (2.03) BS03 8L4 N/A GO:0003824 ... N/A N/A
    3 5uqg:B (2.03) BS01 8L4 N/A GO:0003824 ... N/A N/A
    4 5uqg:B (2.03) BS03 8L4 N/A GO:0003824 ... N/A N/A
    5 5uqg:C (2.03) BS02 8L4 N/A GO:0003824 ... N/A N/A
    6 5uqg:C (2.03) BS03 8L4 N/A GO:0003824 ... N/A N/A
    7 5uqg:D (2.03) BS02 8L4 N/A GO:0003824 ... N/A N/A
    8 5uqg:D (2.03) BS03 8L4 N/A GO:0003824 ... N/A N/A
    9 5uqg:E (2.03) BS02 8L4 N/A GO:0003824 ... N/A N/A
    10 5uqg:E (2.03) BS03 8L4 N/A GO:0003824 ... N/A N/A
    11 5uqg:F (2.03) BS02 8L4 N/A GO:0003824 ... N/A N/A
    12 5uqg:F (2.03) BS03 8L4 N/A GO:0003824 ... N/A N/A
    13 5uqg:G (2.03) BS01 8L4 N/A GO:0003824 ... N/A N/A
    14 5uqg:G (2.03) BS02 8L4 N/A GO:0003824 ... N/A N/A
    15 5uqg:H (2.03) BS01 8L4 N/A GO:0003824 ... N/A N/A
    16 5uqg:H (2.03) BS03 8L4 N/A GO:0003824 ... N/A N/A
    17 5uuz:A (2.496) BS02 8L4 1.1.1.205 GO:0003824 ... A0A6L8P2U9 N/A
    18 5uuz:A (2.496) BS03 8L4 1.1.1.205 GO:0003824 ... A0A6L8P2U9 N/A
    19 5uuz:B (2.496) BS02 8L4 1.1.1.205 GO:0003824 ... A0A6L8P2U9 N/A
    20 5uuz:B (2.496) BS03 8L4 1.1.1.205 GO:0003824 ... A0A6L8P2U9 N/A
    21 5uuz:C (2.496) BS01 8L4 1.1.1.205 GO:0003824 ... A0A6L8P2U9 N/A
    22 5uuz:C (2.496) BS03 8L4 1.1.1.205 GO:0003824 ... A0A6L8P2U9 N/A
    23 5uuz:D (2.496) BS01 8L4 1.1.1.205 GO:0003824 ... A0A6L8P2U9 N/A
    24 5uuz:D (2.496) BS03 8L4 1.1.1.205 GO:0003824 ... A0A6L8P2U9 N/A
    25 5uuz:E (2.496) BS02 8L4 1.1.1.205 GO:0003824 ... A0A6L8P2U9 N/A
    26 5uuz:E (2.496) BS03 8L4 1.1.1.205 GO:0003824 ... A0A6L8P2U9 N/A
    27 5uuz:F (2.496) BS02 8L4 1.1.1.205 GO:0003824 ... A0A6L8P2U9 N/A
    28 5uuz:F (2.496) BS03 8L4 1.1.1.205 GO:0003824 ... A0A6L8P2U9 N/A
    29 5uuz:G (2.496) BS01 8L4 1.1.1.205 GO:0003824 ... A0A6L8P2U9 N/A
    30 5uuz:G (2.496) BS03 8L4 1.1.1.205 GO:0003824 ... A0A6L8P2U9 N/A
    31 5uuz:H (2.496) BS01 8L4 1.1.1.205 GO:0003824 ... A0A6L8P2U9 N/A
    32 5uuz:H (2.496) BS03 8L4 1.1.1.205 GO:0003824 ... A0A6L8P2U9 N/A
    33 5uzs:A (2.367) BS02 8L4 1.1.1.205 GO:0003824 ... A0A0H2YRZ7 N/A
    34 5uzs:A (2.367) BS03 8L4 1.1.1.205 GO:0003824 ... A0A0H2YRZ7 N/A
    35 5uzs:B (2.367) BS02 8L4 1.1.1.205 GO:0003824 ... A0A0H2YRZ7 N/A
    36 5uzs:B (2.367) BS04 8L4 1.1.1.205 GO:0003824 ... A0A0H2YRZ7 N/A
    37 5uzs:C (2.367) BS01 8L4 1.1.1.205 GO:0003824 ... A0A0H2YRZ7 N/A
    38 5uzs:C (2.367) BS03 8L4 1.1.1.205 GO:0003824 ... A0A0H2YRZ7 N/A
    39 5uzs:D (2.367) BS01 8L4 1.1.1.205 GO:0003824 ... A0A0H2YRZ7 N/A
    40 5uzs:D (2.367) BS03 8L4 1.1.1.205 GO:0003824 ... A0A0H2YRZ7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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