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BioLiP
Download all results in tab-seperated text for 4 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5mkx:A (1.68) BS01 82I 2.3.1.48
    2.3.1.57    		 GO:0004402 ... Q92831 28002667 MOAD: ic50=20uM
    PDBbind: -logKd/Ki=4.70, IC50=20uM
    BindingDB: IC50=19953nM
    2 5mkx:B (1.68) BS01 82I 2.3.1.48
    2.3.1.57    		 GO:0004402 ... Q92831 28002667 MOAD: ic50=20uM
    BindingDB: IC50=19953nM
    3 5mli:A (1.63) BS01 82I ? N/A O60885 28002667 MOAD: ic50=130uM
    PDBbind: -logKd/Ki=3.90, IC50=125.9uM
    BindingDB: IC50=125893nM
    4 6yqw:A (1.5) BS01 82I ? N/A Q9H8M2 32410449 BindingDB: IC50=25119nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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