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BioLiP
Download all results in tab-seperated text for 50 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5tzo:A (1.67) BS01 7V7 3.2.1.8 GO:0004553 ... P18429 28925919 MOAD: Kd=5.9uM
    PDBbind: -logKd/Ki=5.23, Kd=5.9uM
    2 5tzo:A (1.67) BS02 7V7 3.2.1.8 GO:0004553 ... P18429 28925919 MOAD: Kd=5.9uM
    PDBbind: -logKd/Ki=5.23, Kd=5.9uM
    3 5tzo:B (1.67) BS01 7V7 3.2.1.8 GO:0004553 ... P18429 28925919 MOAD: Kd=5.9uM
    4 5tzo:B (1.67) BS02 7V7 3.2.1.8 GO:0004553 ... P18429 28925919 MOAD: Kd=5.9uM
    5 5tzo:C (1.67) BS01 7V7 3.2.1.8 GO:0004553 ... P18429 28925919 MOAD: Kd=5.9uM
    6 5tzo:C (1.67) BS02 7V7 3.2.1.8 GO:0004553 ... P18429 28925919 MOAD: Kd=5.9uM
    7 7qt2:A (1.92) BS01 7V7 N/A N/A N/A 36719797
    8 7qt2:B (1.92) BS01 7V7 N/A N/A N/A 36719797
    9 7qt2:C (1.92) BS01 7V7 N/A N/A N/A 36719797
    10 7qt2:D (1.92) BS01 7V7 N/A N/A N/A 36719797
    11 7qt3:A (1.7) BS01 7V7 N/A N/A N/A 36719797
    12 7qt3:B (1.7) BS01 7V7 N/A N/A N/A 36719797
    13 7qt3:C (1.7) BS01 7V7 N/A N/A N/A 36719797
    14 7qt3:D (1.7) BS01 7V7 N/A N/A N/A 36719797
    15 7u64:A (1.75) BS01 7V7 N/A N/A N/A 36513069
    16 7u64:A (1.75) BS02 7V7 N/A N/A N/A 36513069
    17 7u64:B (1.75) BS01 7V7 N/A N/A N/A 36513069
    18 7u64:C (1.75) BS01 7V7 N/A N/A N/A 36513069
    19 7u64:D (1.75) BS01 7V7 N/A N/A N/A 36513069
    20 7u64:E (1.75) BS01 7V7 N/A N/A N/A 36513069
    21 7u64:F (1.75) BS01 7V7 N/A N/A N/A 36513069
    22 7u64:G (1.75) BS01 7V7 N/A N/A N/A 36513069
    23 7u64:H (1.75) BS01 7V7 N/A N/A N/A 36513069
    24 7u64:I (1.75) BS01 7V7 N/A N/A N/A 36513069
    25 7u64:I (1.75) BS02 7V7 N/A N/A N/A 36513069
    26 7u64:J (1.75) BS01 7V7 N/A N/A N/A 36513069
    27 7u64:K (1.75) BS01 7V7 N/A N/A N/A 36513069
    28 7u64:K (1.75) BS02 7V7 N/A N/A N/A 36513069
    29 7u64:L (1.75) BS01 7V7 N/A N/A N/A 36513069
    30 7u64:M (1.75) BS01 7V7 N/A N/A N/A 36513069
    31 7u64:N (1.75) BS01 7V7 N/A N/A N/A 36513069
    32 7u64:O (1.75) BS01 7V7 N/A N/A N/A 36513069
    33 7u64:O (1.75) BS02 7V7 N/A N/A N/A 36513069
    34 7u64:P (1.75) BS01 7V7 N/A N/A N/A 36513069
    35 7u64:Q (1.75) BS01 7V7 N/A N/A N/A 36513069
    36 7u64:R (1.75) BS01 7V7 N/A N/A N/A 36513069
    37 8ef5:M (3.3) BS03 7V7 ? GO:0001965 ... P35372 36368306
    38 8ef5:R (3.3) BS01 7V7 ? GO:0001965 ... P35372 36368306
    39 8tfq:A (1.8) BS01 7V7 N/A N/A N/A 37534714
    40 8tfq:B (1.8) BS01 7V7 N/A N/A N/A 37534714
    41 8tfq:H (1.8) BS01 7V7 N/A N/A N/A 37534714
    42 8tfq:L (1.8) BS01 7V7 N/A N/A N/A 37534714
    43 8v9w:A (1.68) BS01 7V7 N/A N/A N/A 38945452
    44 8v9w:B (1.68) BS01 7V7 N/A N/A N/A 38945452
    45 8v9w:C (1.68) BS01 7V7 N/A N/A N/A 38945452
    46 8v9w:D (1.68) BS01 7V7 N/A N/A N/A 38945452
    47 8v9x:A (1.55) BS01 7V7 N/A N/A N/A 38945452
    48 8v9z:A (1.6) BS01 7V7 N/A N/A N/A 38945452
    49 8va0:A (1.85) BS01 7V7 N/A N/A N/A 38945452
    50 8va0:B (1.85) BS01 7V7 N/A N/A N/A 38945452
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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