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BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1dqr:A (2.5) BS01 6PG 5.3.1.9 GO:0004347 ... Q9N1E2 10653639 MOAD: Ki=43uM
    2 1dqr:B (2.5) BS01 6PG 5.3.1.9 GO:0004347 ... Q9N1E2 10653639 MOAD: Ki=43uM
    3 1j3r:A (2.18) BS01 6PG 5.3.1.9 GO:0004347 ... P84140 N/A
    4 1j3r:B (2.18) BS01 6PG 5.3.1.9 GO:0004347 ... P84140 N/A
    5 1ko8:A (2.4) BS01 6PG 2.7.1.12 GO:0005524 ... P46859 12054802
    6 1pgp:A (2.5) BS01 6PG 1.1.1.44 GO:0004616 ... P00349 7922042 MOAD: Kd=2uM
    PDBbind: -logKd/Ki=5.70, Kd=2uM
    7 1qy4:A (1.8) BS01 6PG 5.3.1.9 GO:0004347 ... P83194 12970347
    8 1qy4:B (1.8) BS01 6PG 5.3.1.9 GO:0004347 ... P83194 12970347
    9 2cxr:A (1.7) BS01 6PG 5.3.1.9 GO:0001701 ... P06745 16375918
    10 2cxr:B (1.7) BS01 6PG 5.3.1.9 GO:0001701 ... P06745 16375918
    11 2iyo:A (2.4) BS01 6PG 1.1.1.44 GO:0004616 ... P96789 17222187
    12 2w8z:A (2.3) BS01 6PG 1.1.1.44 GO:0004616 ... I3NI58 19407374
    13 2w8z:A (2.3) BS02 6PG 1.1.1.44 GO:0004616 ... I3NI58 19407374
    14 2w8z:B (2.3) BS01 6PG 1.1.1.44 GO:0004616 ... I3NI58 19407374
    15 2w8z:B (2.3) BS02 6PG 1.1.1.44 GO:0004616 ... I3NI58 19407374
    16 2w90:A (2.2) BS01 6PG N/A GO:0004616 ... N/A 19407374
    17 2w90:B (2.2) BS01 6PG N/A GO:0004616 ... N/A 19407374
    18 2zya:A (1.6) BS01 6PG 1.1.1.44 GO:0004616 ... P00350 19686854
    19 2zya:A (1.6) BS02 6PG 1.1.1.44 GO:0004616 ... P00350 19686854
    20 2zya:B (1.6) BS01 6PG 1.1.1.44 GO:0004616 ... P00350 19686854
    21 2zya:B (1.6) BS02 6PG 1.1.1.44 GO:0004616 ... P00350 19686854
    22 3axm:A (1.65) BS02 6PG 4.1.1.39 GO:0000166 ... P0C512 22609438 MOAD: Ki=8.5uM
    PDBbind: -logKd/Ki=5.07, Ki=8.5uM
    23 3axm:B (1.65) BS02 6PG 4.1.1.39 GO:0000166 ... P0C512 22609438 MOAD: Ki=8.5uM
    PDBbind: -logKd/Ki=5.07, Ki=8.5uM
    24 3axm:C (1.65) BS02 6PG 4.1.1.39 GO:0000166 ... P0C512 22609438 MOAD: Ki=8.5uM
    25 3axm:D (1.65) BS02 6PG 4.1.1.39 GO:0000166 ... P0C512 22609438 MOAD: Ki=8.5uM
    26 3axm:E (1.65) BS02 6PG 4.1.1.39 GO:0000166 ... P0C512 22609438 MOAD: Ki=8.5uM
    27 3axm:F (1.65) BS02 6PG 4.1.1.39 GO:0000166 ... P0C512 22609438 MOAD: Ki=8.5uM
    28 3axm:G (1.65) BS02 6PG 4.1.1.39 GO:0000166 ... P0C512 22609438 MOAD: Ki=8.5uM
    29 3axm:H (1.65) BS02 6PG 4.1.1.39 GO:0000166 ... P0C512 22609438 MOAD: Ki=8.5uM
    30 3e7f:A (2.2) BS02 6PG 3.1.1.31 GO:0005737 ... Q9GRG6 19345229 BindingDB: Kd=10000nM
    31 3e7f:B (2.2) BS02 6PG 3.1.1.31 GO:0005737 ... Q9GRG6 19345229 BindingDB: Kd=10000nM
    32 3fwn:A (1.5) BS01 6PG 1.1.1.44 GO:0004616 ... P00350 19686854
    33 3fwn:A (1.5) BS02 6PG 1.1.1.44 GO:0004616 ... P00350 19686854
    34 3fwn:B (1.5) BS01 6PG 1.1.1.44 GO:0004616 ... P00350 19686854
    35 3fwn:B (1.5) BS03 6PG 1.1.1.44 GO:0004616 ... P00350 19686854
    36 3q7i:A (1.54) BS01 6PG 5.3.1.9 GO:0004347 ... Q5NFC4 N/A
    37 6fqz:A (1.9) BS01 6PG 1.1.1.44 GO:0000166 ... Q8IKT2 30098336
    38 6fqz:A (1.9) BS02 6PG 1.1.1.44 GO:0000166 ... Q8IKT2 30098336
    39 6fqz:B (1.9) BS01 6PG 1.1.1.44 GO:0000166 ... Q8IKT2 30098336
    40 6fqz:B (1.9) BS02 6PG 1.1.1.44 GO:0000166 ... Q8IKT2 30098336
    41 7cb5:A (2.54) BS01 6PG 1.1.1.44 GO:0000166 ... A0A0H3KGN1 34099682
    42 7cb5:A (2.54) BS02 6PG 1.1.1.44 GO:0000166 ... A0A0H3KGN1 34099682
    43 7cb5:B (2.54) BS01 6PG 1.1.1.44 GO:0000166 ... A0A0H3KGN1 34099682
    44 7cb5:B (2.54) BS02 6PG 1.1.1.44 GO:0000166 ... A0A0H3KGN1 34099682
    45 7cb5:C (2.54) BS01 6PG 1.1.1.44 GO:0000166 ... A0A0H3KGN1 34099682
    46 7cb5:C (2.54) BS02 6PG 1.1.1.44 GO:0000166 ... A0A0H3KGN1 34099682
    47 7cb5:D (2.54) BS01 6PG 1.1.1.44 GO:0000166 ... A0A0H3KGN1 34099682
    48 7cb5:D (2.54) BS02 6PG 1.1.1.44 GO:0000166 ... A0A0H3KGN1 34099682
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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