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BioLiP Library
Download all results in tab-seperated text for 7 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5g57:A (1.73) BS02 6M5 3.1.4.- GO:0004114 ... Q8WQX9 29672041 MOAD: Ki=4nM
    PDBbind: -logKd/Ki=8.40, Ki=3.98nM
    BindingDB: IC50=4.0nM, Ki=4.0nM
    2 5g57:B (1.73) BS01 6M5 3.1.4.- GO:0004114 ... Q8WQX9 29672041 MOAD: Ki=4nM
    BindingDB: IC50=4.0nM, Ki=4.0nM
    3 5laq:A (2.4) BS02 6M5 3.1.4.53 GO:0004114 ... Q07343 29672041 MOAD: Ki=0.63nM
    PDBbind: -logKd/Ki=9.20, Ki=0.63nM
    BindingDB: IC50=0.630957nM, Ki=0.630957nM
    4 5lbo:A (2.25) BS02 6M5 3.1.4.53 GO:0004114 ... Q08499 29672041 BindingDB: IC50=0.630957nM
    5 5lbo:B (2.25) BS02 6M5 3.1.4.53 GO:0004114 ... Q08499 29672041 BindingDB: IC50=0.630957nM
    6 5lbo:C (2.25) BS02 6M5 3.1.4.53 GO:0004114 ... Q08499 29672041 BindingDB: IC50=0.630957nM
    7 5lbo:D (2.25) BS02 6M5 3.1.4.53 GO:0004114 ... Q08499 29672041 BindingDB: IC50=0.630957nM
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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