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BioLiP
Download all results in tab-seperated text for 6 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4cli:A (2.05) BS01 5P8 2.7.10.1 GO:0004672 ... Q9UM73 24819116 MOAD: Ki<0.07nM
    PDBbind: -logKd/Ki=8.89, IC50=1.3nM
    2 4clj:A (1.66) BS01 5P8 2.7.10.1 GO:0004672 ... Q9UM73 24819116 MOAD: Ki=0.7nM
    PDBbind: -logKd/Ki=9.15, Ki=0.70nM
    3 4uxl:A (2.4) BS01 5P8 2.7.10.1 GO:0004672 ... P08922 25733882 MOAD: Ki<0.025nM
    PDBbind: -logKd/Ki=10.60, Ki<0.025nM
    4 5a9u:A (1.6) BS01 5P8 2.7.10.1 GO:0004672 ... Q9UM73 26698910 MOAD: Ki=0.08nM
    PDBbind: -logKd/Ki=10.10, Ki=0.08nM
    5 5aa8:A (1.86) BS01 5P8 2.7.10.1 GO:0004672 ... Q9UM73 26698910 MOAD: Ki=8.6nM
    PDBbind: -logKd/Ki=8.07, Ki=8.6nM
    6 5aa9:A (1.93) BS01 5P8 2.7.10.1 GO:0004672 ... Q9UM73 26698910 MOAD: Ki=6.4nM
    PDBbind: -logKd/Ki=8.19, Ki=6.4nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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