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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5dlt:A (1.6) BS03 5JK 3.1.4.39 GO:0001953 ... Q64610 27075612
    2 5ijq:A (2.05) BS01 5JK 3.1.4.39 GO:0001953 ... Q64610 27268273
    3 5ijs:A (2.2) BS01 5JK 3.1.4.39 GO:0001953 ... Q64610 27268273
    4 5m0e:A (1.95) BS04 5JK 3.1.4.39 GO:0001953 ... Q64610 28165241
    5 7p4j:A (1.79) BS04 5JK 3.1.4.39 GO:0001953 ... Q64610 36623871
    6 7p4o:A (1.69) BS01 5JK 3.1.4.39 GO:0001953 ... Q64610 36623871
    7 7z3k:AAA (2.0) BS03 5JK 3.1.4.39 GO:0001953 ... Q64610 36640760
    8 8c3o:A (2.47) BS01 5JK 3.1.4.39 GO:0003676 ... Q13822 37976710
    9 8c3o:B (2.47) BS01 5JK 3.1.4.39 GO:0003676 ... Q13822 37976710
    10 8c3p:A (2.38) BS01 5JK 3.1.4.39 GO:0003676 ... Q13822 37976710
    11 8c3p:B (2.38) BS01 5JK 3.1.4.39 GO:0003676 ... Q13822 37976710
    12 8c4w:A (1.95) BS03 5JK 3.1.4.39 GO:0003676 ... Q64610 37976710
    13 8c7r:A (2.53) BS02 5JK 3.1.4.39 GO:0003676 ... Q64610 37976710
    14 9ent:A (2.2) BS01 5JK N/A N/A Q64610 39008358
    15 9eu5:A (3.0) BS01 5JK N/A N/A Q64610 39008358
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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