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BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5cvu:A (1.8) BS01 55B 2.1.1.146 GO:0008168 ... O04385 N/A
    2 5cvu:B (1.8) BS01 55B 2.1.1.146 GO:0008168 ... O04385 N/A
    3 5cvu:C (1.8) BS01 55B 2.1.1.146 GO:0008168 ... O04385 N/A
    4 5cvu:D (1.8) BS01 55B 2.1.1.146 GO:0008168 ... O04385 N/A
    5 6kli:A (1.8) BS05 55B 1.10.3.2 GO:0005507 ... Q2PAJ1 32123349
    6 8bap:A (2.3) BS02 55B 1.1.3.38 GO:0000166 ... Q0SBK1 38026814
    7 8bap:B (2.3) BS02 55B 1.1.3.38 GO:0000166 ... Q0SBK1 38026814
    8 8bap:C (2.3) BS02 55B 1.1.3.38 GO:0000166 ... Q0SBK1 38026814
    9 8bap:D (2.3) BS02 55B 1.1.3.38 GO:0000166 ... Q0SBK1 38026814
    10 8bap:E (2.3) BS02 55B 1.1.3.38 GO:0000166 ... Q0SBK1 38026814
    11 8bap:F (2.3) BS02 55B 1.1.3.38 GO:0000166 ... Q0SBK1 38026814
    12 8bap:G (2.3) BS02 55B 1.1.3.38 GO:0000166 ... Q0SBK1 38026814
    13 8bap:H (2.3) BS02 55B 1.1.3.38 GO:0000166 ... Q0SBK1 38026814
    14 8bap:I (2.3) BS02 55B 1.1.3.38 GO:0000166 ... Q0SBK1 38026814
    15 8bap:J (2.3) BS02 55B 1.1.3.38 GO:0000166 ... Q0SBK1 38026814
    16 8bap:K (2.3) BS02 55B 1.1.3.38 GO:0000166 ... Q0SBK1 38026814
    17 8bap:L (2.3) BS02 55B 1.1.3.38 GO:0000166 ... Q0SBK1 38026814
    18 8bap:M (2.3) BS02 55B 1.1.3.38 GO:0000166 ... Q0SBK1 38026814
    19 8bap:N (2.3) BS02 55B 1.1.3.38 GO:0000166 ... Q0SBK1 38026814
    20 8bap:O (2.3) BS02 55B 1.1.3.38 GO:0000166 ... Q0SBK1 38026814
    21 8bap:P (2.3) BS02 55B 1.1.3.38 GO:0000166 ... Q0SBK1 38026814
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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