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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7z1m:A (3.4) BS07 4QM 2.7.7.6 GO:0000428 ... P04051 36070694
    2 7z2z:A (3.07) BS08 4QM 2.7.7.6 GO:0000428 ... P04051 36977686
    3 8bws:C (3.2) BS01 4QM ? GO:0000428 ... P07703 36977686
    4 8bws:I (3.2) BS01 4QM ? GO:0000428 ... Q04307 36977686
    5 8ehf:I (3.3) BS04 4QM 2.7.7.6 GO:0000345 ... P0A8V2 36795753
    6 8to1:I (2.8) BS01 4QM N/A GO:0000345 ... P0A8V2 38951624
    7 8to1:I (2.8) BS02 4QM N/A GO:0000345 ... P0A8V2 38951624
    8 8to6:I (2.9) BS02 4QM N/A GO:0000345 ... P0A8V2 38951624
    9 8to8:I (2.9) BS01 4QM N/A GO:0000345 ... P0A8V2 38951624
    10 8to8:I (2.9) BS02 4QM N/A GO:0000345 ... P0A8V2 38951624
    11 8to8:L (2.9) BS03 4QM N/A GO:0000345 ... P00579 38951624
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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