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BioLiP
Download all results in tab-seperated text for 63 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4xbg:A (2.73) BS01 44E N/A N/A N/A 26777395
    2 4xbg:A (2.73) BS02 44E N/A N/A N/A 26777395
    3 4xbg:H (2.73) BS01 44E N/A N/A N/A 26777395
    4 4xcn:A (2.9) BS01 44E N/A N/A N/A 26777395
    5 4xcn:H (2.9) BS01 44E N/A N/A N/A 26777395
    6 5kk4:B (1.7) BS01 44E ? GO:0005773 ... C0HK49 27647905
    7 5kk4:C (1.7) BS01 44E ? GO:0005773 ... C0HK49 27647905
    8 5kk4:D (1.7) BS01 44E ? GO:0005773 ... C0HK49 27647905
    9 5kk4:D (1.7) BS02 44E ? GO:0005773 ... C0HK49 27647905
    10 5kk4:E (1.7) BS01 44E ? GO:0005773 ... C0HK49 27647905
    11 5kk4:E (1.7) BS02 44E ? GO:0005773 ... C0HK49 27647905
    12 5kk4:F (1.7) BS01 44E ? GO:0005773 ... C0HK49 27647905
    13 5kk4:F (1.7) BS02 44E ? GO:0005773 ... C0HK49 27647905
    14 6g1k:A (3.6) BS02 44E ? GO:0005216 ... U3N7D8 29717981
    15 6g1k:A (3.6) BS03 44E ? GO:0005216 ... U3N7D8 29717981
    16 6g1k:B (3.6) BS01 44E ? GO:0005216 ... U3N7D8 29717981
    17 6g1k:B (3.6) BS03 44E ? GO:0005216 ... U3N7D8 29717981
    18 6g1k:C (3.6) BS02 44E ? GO:0005216 ... U3N7D8 29717981
    19 6g1k:C (3.6) BS03 44E ? GO:0005216 ... U3N7D8 29717981
    20 6g1k:D (3.6) BS01 44E ? GO:0005216 ... U3N7D8 29717981
    21 6g1k:D (3.6) BS03 44E ? GO:0005216 ... U3N7D8 29717981
    22 6hcy:A (3.1) BS01 44E 1.16.1.- GO:0000139 ... Q687X5 30337524
    23 6hcy:A (3.1) BS05 44E 1.16.1.- GO:0000139 ... Q687X5 30337524
    24 6hcy:B (3.1) BS05 44E 1.16.1.- GO:0000139 ... Q687X5 30337524
    25 6hcy:C (3.1) BS04 44E 1.16.1.- GO:0000139 ... Q687X5 30337524
    26 6hd1:A (3.8) BS04 44E 1.16.1.- GO:0000139 ... Q687X5 30337524
    27 6hd1:B (3.8) BS05 44E 1.16.1.- GO:0000139 ... Q687X5 30337524
    28 6hd1:C (3.8) BS04 44E 1.16.1.- GO:0000139 ... Q687X5 30337524
    29 6kyl:B (3.55) BS01 44E ? GO:0005515 ... Q05776 32843686
    30 6kyl:D (3.55) BS01 44E ? GO:0005515 ... Q05776 32843686
    31 6o3j:A (3.416) BS02 44E N/A N/A N/A 31772165
    32 6o3j:H (3.416) BS02 44E N/A N/A N/A 31772165
    33 6o3u:B (3.105) BS01 44E N/A N/A N/A 31772165
    34 6o3u:B (3.105) BS02 44E N/A N/A N/A 31772165
    35 6o3u:D (3.105) BS01 44E N/A N/A N/A 31772165
    36 6o3u:D (3.105) BS02 44E N/A N/A N/A 31772165
    37 6o3u:F (3.105) BS01 44E N/A N/A N/A 31772165
    38 6o3u:F (3.105) BS02 44E N/A N/A N/A 31772165
    39 6o3u:H (3.105) BS01 44E N/A N/A N/A 31772165
    40 6o3u:H (3.105) BS02 44E N/A N/A N/A 31772165
    41 7b05:A (3.8) BS03 44E ? GO:0005216 ... U3N7D8 33236980
    42 7b05:A (3.8) BS04 44E ? GO:0005216 ... U3N7D8 33236980
    43 7b05:B (3.8) BS03 44E ? GO:0005216 ... U3N7D8 33236980
    44 7b05:B (3.8) BS04 44E ? GO:0005216 ... U3N7D8 33236980
    45 7b05:C (3.8) BS03 44E ? GO:0005216 ... U3N7D8 33236980
    46 7b05:C (3.8) BS04 44E ? GO:0005216 ... U3N7D8 33236980
    47 7b05:D (3.8) BS01 44E ? GO:0005216 ... U3N7D8 33236980
    48 7b05:D (3.8) BS04 44E ? GO:0005216 ... U3N7D8 33236980
    49 7b0s:A (3.6) BS03 44E ? GO:0005216 ... U3N7D8 33236980
    50 7b0s:A (3.6) BS04 44E ? GO:0005216 ... U3N7D8 33236980
    51 7b0s:B (3.6) BS03 44E ? GO:0005216 ... U3N7D8 33236980
    52 7b0s:B (3.6) BS04 44E ? GO:0005216 ... U3N7D8 33236980
    53 7b0s:C (3.6) BS03 44E ? GO:0005216 ... U3N7D8 33236980
    54 7b0s:C (3.6) BS04 44E ? GO:0005216 ... U3N7D8 33236980
    55 7b0s:D (3.6) BS01 44E ? GO:0005216 ... U3N7D8 33236980
    56 7b0s:D (3.6) BS04 44E ? GO:0005216 ... U3N7D8 33236980
    57 7b1g:A (3.6) BS02 44E ? GO:0005216 ... U3N7D8 33236980
    58 7b1g:B (3.6) BS01 44E ? GO:0005216 ... U3N7D8 33236980
    59 7b1g:B (3.6) BS02 44E ? GO:0005216 ... U3N7D8 33236980
    60 7b1g:C (3.6) BS01 44E ? GO:0005216 ... U3N7D8 33236980
    61 7b1g:C (3.6) BS03 44E ? GO:0005216 ... U3N7D8 33236980
    62 7b1g:D (3.6) BS01 44E ? GO:0005216 ... U3N7D8 33236980
    63 7b1g:D (3.6) BS02 44E ? GO:0005216 ... U3N7D8 33236980
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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