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BioLiP
Download all results in tab-seperated text for 17 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4r6e:A (2.2) BS01 3JD 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 28001384 MOAD: ic50=132nM
    PDBbind: -logKd/Ki=7.78, IC50=16.7nM
    BindingDB: IC50=132nM, Ki=3.2nM, EC50=31000nM
    2 4r6e:B (2.2) BS01 3JD 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 28001384 MOAD: ic50=132nM
    BindingDB: IC50=132nM, Ki=3.2nM, EC50=31000nM
    3 4r6e:C (2.2) BS01 3JD 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 28001384 MOAD: ic50=132nM
    BindingDB: IC50=132nM, Ki=3.2nM, EC50=31000nM
    4 4r6e:D (2.2) BS01 3JD 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 28001384 MOAD: ic50=132nM
    BindingDB: IC50=132nM, Ki=3.2nM, EC50=31000nM
    5 7f43:B (1.62) BS01 3JD 2.4.2.- GO:0003950 ... Q460N3 N/A
    6 7kk5:A (1.7) BS01 3JD 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 33361107 BindingDB: IC50=132nM, Ki=3.2nM, EC50=31000nM
    7 7kk5:B (1.7) BS01 3JD 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 33361107 BindingDB: IC50=132nM, Ki=3.2nM, EC50=31000nM
    8 7kk5:C (1.7) BS01 3JD 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 33361107 BindingDB: IC50=132nM, Ki=3.2nM, EC50=31000nM
    9 7kk5:D (1.7) BS01 3JD 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 33361107 BindingDB: IC50=132nM, Ki=3.2nM, EC50=31000nM
    10 7kkp:A (1.4) BS02 3JD 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 33361107 BindingDB: IC50=2355nM
    11 7kkp:B (1.4) BS02 3JD 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 33361107 BindingDB: IC50=2355nM
    12 8hlq:A (2.7) BS01 3JD 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9UGN5 N/A
    13 8hlq:B (2.7) BS01 3JD 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9UGN5 N/A
    14 8i2m:A (2.1) BS01 3JD 6.1.1.2 GO:0000166 ... P00954 37070195
    15 8tnc:A (1.4) BS01 3JD N/A N/A N/A 38574125
    16 8tnc:B (1.4) BS01 3JD N/A N/A N/A 38574125
    17 8tnc:C (1.4) BS01 3JD N/A N/A N/A 38574125
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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