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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1f12:A (2.4) BS01 3HC 1.1.1.35 GO:0003857 ... Q16836 10840044
    2 3pvt:A (2.03) BS01 3HC 1.14.13.149 GO:0005515 ... P76077 21247899
    3 3vbj:A (1.8) BS02 3HC N/A GO:0016740 ... N/A 22220494
    4 3vbj:A (1.8) BS04 3HC N/A GO:0016740 ... N/A 22220494
    5 3vbj:C (1.8) BS02 3HC N/A GO:0016740 ... N/A 22220494
    6 3vbj:C (1.8) BS04 3HC N/A GO:0016740 ... N/A 22220494
    7 3vbj:E (1.8) BS02 3HC N/A GO:0016740 ... N/A 22220494
    8 3vbj:E (1.8) BS04 3HC N/A GO:0016740 ... N/A 22220494
    9 4fnb:A (1.8) BS01 3HC 4.2.1.17 GO:0006635 ... I6Y8B5 N/A
    10 4r3u:A (2.5) BS01 3HC 5.4.99.64 GO:0003824 ... I3VE77 25720495
    11 4r3u:B (2.5) BS01 3HC 5.4.99.64 GO:0003824 ... I3VE77 25720495
    12 6zic:AAA (2.2) BS01 3HC 1.1.1.35
    4.2.1.17
    5.3.3.8    		 GO:0003824 ... P07896 N/A
    13 6zic:BBB (2.2) BS01 3HC 1.1.1.35
    4.2.1.17
    5.3.3.8    		 GO:0003824 ... P07896 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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