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BioLiP
Download all results in tab-seperated text for 54 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2dd5:C (2.0) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 17222425
    2 2dd5:F (2.0) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 17222425
    3 2dd5:I (2.0) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 17222425
    4 2dd5:L (2.0) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 17222425
    5 2dxb:C (2.25) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 19785438
    6 2dxb:F (2.25) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 19785438
    7 2dxb:I (2.25) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 19785438
    8 2dxb:L (2.25) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 19785438
    9 2dxb:O (2.25) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 19785438
    10 2dxb:R (2.25) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 19785438
    11 2dxb:U (2.25) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 19785438
    12 2dxb:X (2.25) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 19785438
    13 2dxc:C (1.9) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 19785438
    14 2dxc:F (1.9) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 19785438
    15 2dxc:I (1.9) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 19785438
    16 2dxc:L (1.9) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 19785438
    17 2ero:A (2.5) BS04 3CO 3.4.24.- GO:0004222 ... Q9DGB9 16688218
    18 2erp:A (2.95) BS04 3CO 3.4.24.- GO:0004222 ... Q9DGB9 16688218
    19 2zzd:C (1.78) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 19785438
    20 2zzd:F (1.78) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 19785438
    21 2zzd:I (1.78) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 19785438
    22 2zzd:L (1.78) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 19785438
    23 3hht:A (1.16) BS01 3CO 4.2.1.84 GO:0003824 ... Q84FS5 N/A
    24 3koi:A (1.64) BS01 3CO 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 20637176
    25 3qxe:A (2.104) BS01 3CO N/A GO:0003824 ... N/A 21473592
    26 3qxe:C (2.104) BS01 3CO N/A GO:0003824 ... N/A 21473592
    27 3qxe:E (2.104) BS01 3CO N/A GO:0003824 ... N/A 21473592
    28 3qxe:G (2.104) BS01 3CO N/A GO:0003824 ... N/A 21473592
    29 3qyg:A (2.3) BS01 3CO N/A GO:0003824 ... N/A 21473592
    30 3qyg:C (2.3) BS01 3CO N/A GO:0003824 ... N/A 21473592
    31 3qyg:E (2.3) BS01 3CO N/A GO:0003824 ... N/A 21473592
    32 3qyg:G (2.3) BS01 3CO N/A GO:0003824 ... N/A 21473592
    33 3qyh:A (2.0) BS01 3CO N/A GO:0003824 ... N/A 21473592
    34 3qyh:C (2.0) BS01 3CO N/A GO:0003824 ... N/A 21473592
    35 3qyh:E (2.0) BS01 3CO N/A GO:0003824 ... N/A 21473592
    36 3qyh:G (2.0) BS01 3CO N/A GO:0003824 ... N/A 21473592
    37 3qz5:A (2.5) BS01 3CO N/A GO:0003824 ... N/A 21473592
    38 3qz5:C (2.5) BS01 3CO N/A GO:0003824 ... N/A 21473592
    39 3qz5:E (2.5) BS01 3CO N/A GO:0003824 ... N/A 21473592
    40 3qz5:G (2.5) BS01 3CO N/A GO:0003824 ... N/A 21473592
    41 3qz9:A (2.4) BS01 3CO N/A GO:0003824 ... N/A 21473592
    42 3qz9:C (2.4) BS01 3CO N/A GO:0003824 ... N/A 21473592
    43 3qz9:E (2.4) BS01 3CO N/A GO:0003824 ... N/A 21473592
    44 3qz9:G (2.4) BS01 3CO N/A GO:0003824 ... N/A 21473592
    45 3vyg:C (1.72) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 N/A
    46 3vyg:F (1.72) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 N/A
    47 3vyg:I (1.72) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 N/A
    48 3vyg:L (1.72) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 N/A
    49 4hei:A (1.6) BS01 3CO ? GO:0006417 ... H9L4N9 23519794
    50 4hei:A (1.6) BS02 3CO ? GO:0006417 ... H9L4N9 23519794
    51 4hei:B (1.6) BS01 3CO ? GO:0006417 ... H9L4N9 23519794
    52 4hei:B (1.6) BS02 3CO ? GO:0006417 ... H9L4N9 23519794
    53 7qov:A (1.4) BS01 3CO 4.2.1.84 GO:0003824 ... Q84FS5 36106339
    54 7qoy:A (1.45) BS01 3CO 4.2.1.84 GO:0003824 ... Q84FS5 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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