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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1f5a:A (2.5) BS03 3AT 2.7.7.19 GO:0003723 ... P25500 10944102
    2 1fa0:A (2.6) BS03 3AT 2.7.7.19 GO:0000287 ... P29468 10958780
    3 1fa0:B (2.6) BS03 3AT 2.7.7.19 GO:0000287 ... P29468 10958780
    4 1k90:A (2.75) BS01 3AT 4.6.1.1 GO:0005576 ... P40136 11807546
    5 1k90:B (2.75) BS01 3AT 4.6.1.1 GO:0005576 ... P40136 11807546
    6 1k90:C (2.75) BS01 3AT 4.6.1.1 GO:0005576 ... P40136 11807546
    7 1q78:A (2.8) BS01 3AT 2.7.7.19 GO:0003723 ... P25500 15328606
    8 1q79:A (2.15) BS03 3AT 2.7.7.19 GO:0003723 ... P25500 15328606
    9 1xfv:A (3.35) BS02 3AT 4.6.1.1 GO:0003824 ... P40136 15719022 PDBbind: -logKd/Ki=3.89, Kd=130uM
    10 1xfv:B (3.35) BS02 3AT 4.6.1.1 GO:0003824 ... P40136 15719022
    11 1xfv:C (3.35) BS02 3AT 4.6.1.1 GO:0003824 ... P40136 15719022
    12 1xfv:D (3.35) BS02 3AT 4.6.1.1 GO:0003824 ... P40136 15719022
    13 1xfv:E (3.35) BS02 3AT 4.6.1.1 GO:0003824 ... P40136 15719022
    14 1xfv:F (3.35) BS02 3AT 4.6.1.1 GO:0003824 ... P40136 15719022
    15 3c23:A (2.5) BS01 3AT 2.7.7.85 GO:0003677 ... Q9WY43 18439896
    16 3c23:B (2.5) BS01 3AT 2.7.7.85 GO:0003677 ... Q9WY43 18439896
    17 3er9:B (2.06) BS02 3AT 2.7.7.19 GO:0005524 ... P23371 19446524
    18 3erc:C (3.21) BS04 3AT 2.7.7.19 GO:0005524 ... P23371 19446524
    19 3erc:D (3.21) BS04 3AT 2.7.7.19 GO:0005524 ... P23371 19446524
    20 3n0z:A (1.7) BS01 3AT 4.6.1.1 GO:0000166 ... A0A2U2H3Y1 21094652
    21 3n0z:B (1.7) BS01 3AT 4.6.1.1 GO:0000166 ... A0A2U2H3Y1 21094652
    22 4fhy:A (2.7) BS01 3AT 2.7.7.19
    2.7.7.52    		 N/A O13833 22885303
    23 4lt6:A (2.79) BS01 3AT 2.7.7.19 GO:0003723 ... Q9BWT3 24076191
    24 4lt6:B (2.79) BS01 3AT 2.7.7.19 GO:0003723 ... Q9BWT3 24076191
    25 4xj4:A (1.596) BS01 3AT 2.7.7.- GO:0140701 ... Q9KVG7 25865248
    26 4xj4:A (1.596) BS02 3AT 2.7.7.- GO:0140701 ... Q9KVG7 25865248
    27 4yvz:A (2.495) BS02 3AT 2.7.7.85 GO:0003677 ... Q9WY43 26014055 MOAD: ic50=3uM
    PDBbind: -logKd/Ki=5.52, IC50=3uM
    28 4yvz:B (2.495) BS01 3AT 2.7.7.85 GO:0003677 ... Q9WY43 26014055 MOAD: ic50=3uM
    PDBbind: -logKd/Ki=5.52, IC50=3uM
    29 6k0r:E (2.502) BS01 3AT 3.6.4.12 GO:0005524 ... Q9Y230 32376767
    30 6k0r:J (2.502) BS01 3AT 3.6.4.12 GO:0005524 ... Q9Y230 32376767
    31 8bo1:B (2.501) BS01 3AT 4.6.1.1 GO:0005576 ... A0A9P1NJI6 37747912
    32 8bo1:D (2.501) BS01 3AT 4.6.1.1 GO:0005576 ... A0A9P1NJI6 37747912
    33 8br1:B (2.044) BS01 3AT 4.6.1.1 GO:0005576 ... A0A9P1NJI6 37747912
    34 8br1:D (2.044) BS01 3AT 4.6.1.1 GO:0005576 ... A0A9P1NJI6 37747912
    35 8sj1:A (2.81) BS05 3AT 2.7.7.86 N/A Q8C6L5 38740774
    36 8sj1:C (2.81) BS04 3AT 2.7.7.86 N/A Q8C6L5 38740774
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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