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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3agn:A (0.96) BS01 3AM 4.6.1.20 GO:0003723 ... P00654 20606265
    2 3ago:A (0.99) BS01 3AM 4.6.1.20 GO:0003723 ... P00654 20606265
    3 3c0g:A (2.19) BS01 3AM 2.7.11.1 GO:0004672 ... O14936 18423203
    4 3c0g:B (2.19) BS01 3AM 2.7.11.1 GO:0004672 ... O14936 18423203
    5 3c0i:A (1.85) BS01 3AM 2.7.11.1 GO:0004672 ... O14936 18423203
    6 3it3:A (1.5) BS01 3AM N/A N/A N/A 19836403
    7 3it3:B (1.5) BS01 3AM N/A N/A N/A 19836403
    8 3ocw:A (1.85) BS02 3AM 3.1.3.2 GO:0009279 ... P26093 20934434
    9 3w2v:A (2.6) BS02 3AM ? N/A Q8U1S6 23583914
    10 5ldo:A (2.752) BS01 3AM 3.1.4.58 GO:0004113 ... A0A140NFI1 28141848 PDBbind: -logKd/Ki=3.75, Kd=177uM
    11 8iy0:A (2.26) BS01 3AM ? N/A Q6PVL0 38103556
    12 8iy0:B (2.26) BS01 3AM ? N/A Q6PVL0 38103556
    13 8iy0:C (2.26) BS01 3AM ? N/A Q6PVL0 38103556
    14 8iy0:D (2.26) BS01 3AM ? N/A Q6PVL0 38103556
    15 8iy0:E (2.26) BS01 3AM ? N/A Q6PVL0 38103556
    16 8iy0:F (2.26) BS01 3AM ? N/A Q6PVL0 38103556
    17 8iy1:A (2.1) BS01 3AM ? N/A Q6PVL0 38103556
    18 8iy1:B (2.1) BS01 3AM ? N/A Q6PVL0 38103556
    19 8iy1:C (2.1) BS01 3AM ? N/A Q6PVL0 38103556
    20 8iy1:D (2.1) BS01 3AM ? N/A Q6PVL0 38103556
    21 8iy1:E (2.1) BS01 3AM ? N/A Q6PVL0 38103556
    22 8iy1:F (2.1) BS01 3AM ? N/A Q6PVL0 38103556
    23 8iy2:A (2.76) BS01 3AM ? N/A Q6PVL0 38103556
    24 8iy2:A (2.76) BS03 3AM ? N/A Q6PVL0 38103556
    25 8iy2:B (2.76) BS01 3AM ? N/A Q6PVL0 38103556
    26 8iy2:B (2.76) BS03 3AM ? N/A Q6PVL0 38103556
    27 8iy2:C (2.76) BS01 3AM ? N/A Q6PVL0 38103556
    28 8iy2:C (2.76) BS03 3AM ? N/A Q6PVL0 38103556
    29 8iy2:D (2.76) BS02 3AM ? N/A Q6PVL0 38103556
    30 8iy2:D (2.76) BS03 3AM ? N/A Q6PVL0 38103556
    31 8iy2:E (2.76) BS01 3AM ? N/A Q6PVL0 38103556
    32 8iy2:E (2.76) BS03 3AM ? N/A Q6PVL0 38103556
    33 8iy2:F (2.76) BS02 3AM ? N/A Q6PVL0 38103556
    34 8iy2:F (2.76) BS03 3AM ? N/A Q6PVL0 38103556
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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