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BioLiP
Download all results in tab-seperated text for 25 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3goy:A (2.8) BS01 3AB 2.4.2.- GO:0003950 ... Q460N5 22343925
    2 3goy:B (2.8) BS01 3AB 2.4.2.- GO:0003950 ... Q460N5 22343925
    3 3goy:C (2.8) BS01 3AB 2.4.2.- GO:0003950 ... Q460N5 22343925
    4 3goy:D (2.8) BS01 3AB 2.4.2.- GO:0003950 ... Q460N5 22343925
    5 3hkv:A (2.1) BS01 3AB 2.4.2.- GO:0003950 ... Q53GL7 N/A
    6 3hkv:B (2.1) BS01 3AB 2.4.2.- GO:0003950 ... Q53GL7 N/A
    7 3kcz:A (2.0) BS01 3AB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9UGN5 20092359
    8 3kcz:B (2.0) BS01 3AB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9UGN5 20092359
    9 3se2:C (2.3) BS01 3AB 2.4.2.- GO:0003950 ... Q460N5 22343925
    10 3se2:D (2.3) BS01 3AB 2.4.2.- GO:0003950 ... Q460N5 22343925
    11 4f0d:A (2.7) BS01 3AB 2.4.2.- GO:0003950 ... Q8N5Y8 22661712
    12 4pml:A (1.87) BS02 3AB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 25286857 PDBbind: -logKd/Ki=4.52, IC50>30uM
    13 4pml:B (1.87) BS02 3AB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 25286857
    14 4pml:C (1.87) BS01 3AB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 25286857
    15 4pml:D (1.87) BS02 3AB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 25286857
    16 4tkf:A (2.6) BS03 3AB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 25286857
    17 4tkf:C (2.6) BS03 3AB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 25286857
    18 5n3q:A (1.31) BS01 3AB 2.7.11.11 GO:0000287 ... P25321 33021032
    19 5n3q:A (1.31) BS02 3AB 2.7.11.11 GO:0000287 ... P25321 33021032
    20 6fxi:A (2.6) BS01 3AB 2.4.2.- GO:0003950 ... Q53GL7 N/A
    21 6fxi:B (2.6) BS01 3AB 2.4.2.- GO:0003950 ... Q53GL7 N/A
    22 6yiu:A (1.36) BS01 3AB 3.4.21.4 GO:0004175 ... P00760 N/A
    23 7f41:B (1.39721) BS01 3AB 2.4.2.- GO:0003950 ... Q460N3 N/A
    24 8akf:A (1.97) BS03 3AB 2.3.1.-
    2.3.1.286
    2.4.2.-    		 GO:0070403 ... Q8N6T7 N/A
    25 8akf:B (1.97) BS03 3AB 2.3.1.-
    2.3.1.286
    2.4.2.-    		 GO:0070403 ... Q8N6T7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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