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BioLiP
Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4pjt:A (2.35) BS01 2YQ 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 25195882 MOAD: ic50=0.57nM
    PDBbind: -logKd/Ki=9.24, IC50=0.57nM
    BindingDB: Ki=1.2nM, IC50=0.570000nM, EC50=2.5nM
    2 4pjt:B (2.35) BS01 2YQ 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 25195882 MOAD: ic50=0.57nM
    BindingDB: Ki=1.2nM, IC50=0.570000nM, EC50=2.5nM
    3 4pjt:C (2.35) BS01 2YQ 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 25195882 MOAD: ic50=0.57nM
    BindingDB: Ki=1.2nM, IC50=0.570000nM, EC50=2.5nM
    4 4pjt:D (2.35) BS01 2YQ 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 25195882 MOAD: ic50=0.57nM
    BindingDB: Ki=1.2nM, IC50=0.570000nM, EC50=2.5nM
    5 4pjv:A (2.5) BS01 2YQ 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9UGN5 25195882 BindingDB: Ki=0.850000nM
    6 4pjv:B (2.5) BS01 2YQ 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9UGN5 25195882 BindingDB: Ki=0.850000nM
    7 4und:A (2.2) BS01 2YQ 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 28001384 PDBbind: -logKd/Ki=8.96, Kd=1.1nM
    BindingDB: Ki=1.2nM, IC50=0.570000nM, EC50=2.5nM
    8 4und:B (2.2) BS01 2YQ 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 28001384 BindingDB: Ki=1.2nM, IC50=0.570000nM, EC50=2.5nM
    9 7kk3:A (2.06) BS01 2YQ 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 33361107 BindingDB: Ki=1.2nM, IC50=0.570000nM, EC50=2.5nM
    10 7kk3:B (2.06) BS01 2YQ 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 33361107 BindingDB: Ki=1.2nM, IC50=0.570000nM, EC50=2.5nM
    11 7kk3:C (2.06) BS01 2YQ 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 33361107 BindingDB: Ki=1.2nM, IC50=0.570000nM, EC50=2.5nM
    12 7kk3:D (2.06) BS01 2YQ 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 33361107 BindingDB: Ki=1.2nM, IC50=0.570000nM, EC50=2.5nM
    13 7kkn:A (1.48) BS02 2YQ 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 33361107
    14 7kkn:B (1.48) BS02 2YQ 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 33361107
    15 7kkn:C (1.48) BS02 2YQ 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 33361107
    16 7kkn:D (1.48) BS02 2YQ 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 33361107
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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