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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4ph7:A (2.55) BS01 2Y5 ? GO:0001786 ... Q02201 26206936
    2 4ph7:B (2.55) BS01 2Y5 ? GO:0001786 ... Q02201 26206936
    3 4ph7:C (2.55) BS01 2Y5 ? GO:0001786 ... Q02201 26206936
    4 4ph7:D (2.55) BS01 2Y5 ? GO:0001786 ... Q02201 26206936
    5 6roi:A (3.7) BS02 2Y5 7.6.2.1 GO:0000166 ... P39524 31243363
    6 6roj:A (2.9) BS02 2Y5 7.2.4.2
    7.6.2.1    		 GO:0000166 ... P13187
    P39524    		 31243363
    7 7oh4:A (3.0) BS01 2Y5 7.6.2.1 GO:0000166 ... P39524 34023399
    8 7oh5:A (2.9) BS04 2Y5 7.6.2.1 GO:0000166 ... P39524 34023399
    9 7oh6:A (3.0) BS01 2Y5 7.6.2.1 GO:0000166 ... P39524 34023399
    10 7oh7:A (3.8) BS01 2Y5 7.6.2.1 GO:0000166 ... P39524 34023399
    11 7pem:A (3.1) BS01 2Y5 7.6.2.1 GO:0000166 ... P39524 N/A
    12 8t3o:R (3.06) BS02 2Y5 ? GO:0004930 ... Q5NUL3 38198545
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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