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BioLiP
Download all results in tab-seperated text for 185 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a54:A (1.6) BS01 2HP ? GO:0006817 ... P0AG82 9671506
    2 1a55:A (2.4) BS01 2HP ? GO:0006817 ... P0AG82 9671506
    3 1gxu:A (1.27) BS01 2HP 6.2.-.- N/A P30131 12206761
    4 1ixi:A (1.89) BS01 2HP ? GO:0006817 ... P0AG82 9228942 MOAD: Kd=0.36uM
    5 1jsc:A (2.6) BS02 2HP 2.2.1.6 GO:0000287 ... P07342 11902841
    6 1jsc:B (2.6) BS03 2HP 2.2.1.6 GO:0000287 ... P07342 11902841
    7 1jsc:B (2.6) BS04 2HP 2.2.1.6 GO:0000287 ... P07342 11902841
    8 1pr9:A (1.96) BS02 2HP 1.1.1.10 GO:0004090 ... Q7Z4W1 15103634
    9 1pr9:B (1.96) BS02 2HP 1.1.1.10 GO:0004090 ... Q7Z4W1 15103634
    10 2ddg:A (2.1) BS04 2HP 3.2.2.- GO:0004844 ... Q5SJ65 17870091
    11 2dem:A (1.95) BS04 2HP 3.2.2.- GO:0004844 ... Q5SJ65 17870091
    12 2dp6:A (1.8) BS04 2HP 3.2.2.- GO:0004844 ... Q5SJ65 N/A
    13 2np1:A (2.0) BS02 2HP ? GO:0005576 ... Q26239 9546222
    14 2np1:B (2.0) BS02 2HP ? GO:0005576 ... Q26239 9546222
    15 2obe:A (2.1) BS01 2HP ? GO:0005198 ... Q8UY79 17108028
    16 2obe:A (2.1) BS02 2HP ? GO:0005198 ... Q8UY79 17108028
    17 2obe:A (2.1) BS03 2HP ? GO:0005198 ... Q8UY79 17108028
    18 2obe:A (2.1) BS04 2HP ? GO:0005198 ... Q8UY79 17108028
    19 2obe:A (2.1) BS05 2HP ? GO:0005198 ... Q8UY79 17108028
    20 2obe:B (2.1) BS01 2HP ? GO:0005198 ... Q8UY79 17108028
    21 2obe:B (2.1) BS02 2HP ? GO:0005198 ... Q8UY79 17108028
    22 2obe:B (2.1) BS03 2HP ? GO:0005198 ... Q8UY79 17108028
    23 2obe:B (2.1) BS04 2HP ? GO:0005198 ... Q8UY79 17108028
    24 2obe:B (2.1) BS05 2HP ? GO:0005198 ... Q8UY79 17108028
    25 2obe:B (2.1) BS06 2HP ? GO:0005198 ... Q8UY79 17108028
    26 2obe:B (2.1) BS07 2HP ? GO:0005198 ... Q8UY79 17108028
    27 2obe:B (2.1) BS08 2HP ? GO:0005198 ... Q8UY79 17108028
    28 2obe:B (2.1) BS09 2HP ? GO:0005198 ... Q8UY79 17108028
    29 2obe:C (2.1) BS01 2HP ? GO:0005198 ... Q8UY79 17108028
    30 2obe:C (2.1) BS02 2HP ? GO:0005198 ... Q8UY79 17108028
    31 2obe:C (2.1) BS03 2HP ? GO:0005198 ... Q8UY79 17108028
    32 2obe:C (2.1) BS04 2HP ? GO:0005198 ... Q8UY79 17108028
    33 2x1l:A (2.3) BS03 2HP 6.1.1.10 GO:0000166 ... A0R3E2 20796028
    34 2x1l:B (2.3) BS03 2HP 6.1.1.10 GO:0000166 ... A0R3E2 20796028
    35 2x1l:C (2.3) BS03 2HP 6.1.1.10 GO:0000166 ... A0R3E2 20796028
    36 2x1m:A (2.8) BS02 2HP 6.1.1.10 GO:0000166 ... A0R3E2 20796028
    37 3c46:A (2.0) BS02 2HP 2.7.7.6 N/A Q859P9 19061645
    38 3c46:B (2.0) BS02 2HP 2.7.7.6 N/A Q859P9 19061645
    39 3ch3:X (1.79) BS01 2HP 3.4.22.- GO:0006508 ... Q9TY95 19591843
    40 3ch3:X (1.79) BS02 2HP 3.4.22.- GO:0006508 ... Q9TY95 19591843
    41 3q22:A (2.11) BS04 2HP 2.7.7.6 N/A Q859P9 21321236
    42 3q22:B (2.11) BS03 2HP 2.7.7.6 N/A Q859P9 21321236
    43 3q23:A (1.8) BS05 2HP 2.7.7.6 N/A Q859P9 21321236
    44 3q23:B (1.8) BS06 2HP 2.7.7.6 N/A Q859P9 21321236
    45 3q24:A (1.81) BS04 2HP 2.7.7.6 N/A Q859P9 21321236
    46 3q24:B (1.81) BS02 2HP 2.7.7.6 N/A Q859P9 21321236
    47 4ind:A (1.8) BS01 2HP ? N/A Q6Q0L3 N/A
    48 4ind:A (1.8) BS02 2HP ? N/A Q6Q0L3 N/A
    49 4ind:A (1.8) BS03 2HP ? N/A Q6Q0L3 N/A
    50 4ind:A (1.8) BS04 2HP ? N/A Q6Q0L3 N/A
    51 4ind:B (1.8) BS01 2HP ? N/A Q6Q0L3 N/A
    52 4ind:B (1.8) BS02 2HP ? N/A Q6Q0L3 N/A
    53 4ind:B (1.8) BS03 2HP ? N/A Q6Q0L3 N/A
    54 4ind:B (1.8) BS04 2HP ? N/A Q6Q0L3 N/A
    55 4ind:C (1.8) BS01 2HP ? N/A Q6Q0L3 N/A
    56 4ind:C (1.8) BS02 2HP ? N/A Q6Q0L3 N/A
    57 4ind:C (1.8) BS03 2HP ? N/A Q6Q0L3 N/A
    58 4ind:D (1.8) BS01 2HP ? N/A Q6Q0L3 N/A
    59 4ind:D (1.8) BS02 2HP ? N/A Q6Q0L3 N/A
    60 4ind:D (1.8) BS03 2HP ? N/A Q6Q0L3 N/A
    61 4ind:D (1.8) BS04 2HP ? N/A Q6Q0L3 N/A
    62 4ind:E (1.8) BS01 2HP ? N/A Q6Q0L3 N/A
    63 4ind:E (1.8) BS02 2HP ? N/A Q6Q0L3 N/A
    64 4ind:E (1.8) BS03 2HP ? N/A Q6Q0L3 N/A
    65 4ind:E (1.8) BS04 2HP ? N/A Q6Q0L3 N/A
    66 4ind:F (1.8) BS01 2HP ? N/A Q6Q0L3 N/A
    67 4ind:F (1.8) BS02 2HP ? N/A Q6Q0L3 N/A
    68 4ind:F (1.8) BS03 2HP ? N/A Q6Q0L3 N/A
    69 4ind:F (1.8) BS04 2HP ? N/A Q6Q0L3 N/A
    70 4ind:G (1.8) BS01 2HP ? N/A Q6Q0L3 N/A
    71 4ind:G (1.8) BS02 2HP ? N/A Q6Q0L3 N/A
    72 4ind:G (1.8) BS03 2HP ? N/A Q6Q0L3 N/A
    73 4ind:G (1.8) BS04 2HP ? N/A Q6Q0L3 N/A
    74 4ind:H (1.8) BS01 2HP ? N/A Q6Q0L3 N/A
    75 4ind:H (1.8) BS02 2HP ? N/A Q6Q0L3 N/A
    76 4ind:H (1.8) BS03 2HP ? N/A Q6Q0L3 N/A
    77 4ind:H (1.8) BS04 2HP ? N/A Q6Q0L3 N/A
    78 4ind:I (1.8) BS01 2HP ? N/A Q6Q0L3 N/A
    79 4ind:I (1.8) BS02 2HP ? N/A Q6Q0L3 N/A
    80 4ind:I (1.8) BS03 2HP ? N/A Q6Q0L3 N/A
    81 4ind:I (1.8) BS04 2HP ? N/A Q6Q0L3 N/A
    82 4ind:J (1.8) BS01 2HP ? N/A Q6Q0L3 N/A
    83 4ind:J (1.8) BS02 2HP ? N/A Q6Q0L3 N/A
    84 4ind:J (1.8) BS03 2HP ? N/A Q6Q0L3 N/A
    85 4ind:K (1.8) BS01 2HP ? N/A Q6Q0L3 N/A
    86 4ind:K (1.8) BS02 2HP ? N/A Q6Q0L3 N/A
    87 4ind:K (1.8) BS03 2HP ? N/A Q6Q0L3 N/A
    88 4ind:L (1.8) BS01 2HP ? N/A Q6Q0L3 N/A
    89 4ind:L (1.8) BS02 2HP ? N/A Q6Q0L3 N/A
    90 4ind:L (1.8) BS03 2HP ? N/A Q6Q0L3 N/A
    91 4ind:L (1.8) BS04 2HP ? N/A Q6Q0L3 N/A
    92 4ind:M (1.8) BS01 2HP ? N/A Q6Q0L3 N/A
    93 4ind:M (1.8) BS02 2HP ? N/A Q6Q0L3 N/A
    94 4ind:M (1.8) BS03 2HP ? N/A Q6Q0L3 N/A
    95 4ind:N (1.8) BS01 2HP ? N/A Q6Q0L3 N/A
    96 4ind:N (1.8) BS02 2HP ? N/A Q6Q0L3 N/A
    97 4ind:N (1.8) BS03 2HP ? N/A Q6Q0L3 N/A
    98 4ind:N (1.8) BS04 2HP ? N/A Q6Q0L3 N/A
    99 4ind:O (1.8) BS01 2HP ? N/A Q6Q0L3 N/A
    100 4ind:O (1.8) BS02 2HP ? N/A Q6Q0L3 N/A
    101 4ind:O (1.8) BS03 2HP ? N/A Q6Q0L3 N/A
    102 4ind:O (1.8) BS04 2HP ? N/A Q6Q0L3 N/A
    103 4ind:P (1.8) BS01 2HP ? N/A Q6Q0L3 N/A
    104 4ind:P (1.8) BS02 2HP ? N/A Q6Q0L3 N/A
    105 4ind:P (1.8) BS03 2HP ? N/A Q6Q0L3 N/A
    106 4ind:Q (1.8) BS01 2HP ? N/A Q6Q0L3 N/A
    107 4ind:Q (1.8) BS02 2HP ? N/A Q6Q0L3 N/A
    108 4ind:Q (1.8) BS03 2HP ? N/A Q6Q0L3 N/A
    109 4ind:Q (1.8) BS04 2HP ? N/A Q6Q0L3 N/A
    110 4ind:R (1.8) BS01 2HP ? N/A Q6Q0L3 N/A
    111 4ind:R (1.8) BS02 2HP ? N/A Q6Q0L3 N/A
    112 4ind:R (1.8) BS03 2HP ? N/A Q6Q0L3 N/A
    113 4ind:R (1.8) BS04 2HP ? N/A Q6Q0L3 N/A
    114 4ind:S (1.8) BS01 2HP ? N/A Q6Q0L3 N/A
    115 4ind:S (1.8) BS02 2HP ? N/A Q6Q0L3 N/A
    116 4ind:S (1.8) BS03 2HP ? N/A Q6Q0L3 N/A
    117 4ind:S (1.8) BS04 2HP ? N/A Q6Q0L3 N/A
    118 4ind:T (1.8) BS01 2HP ? N/A Q6Q0L3 N/A
    119 4ind:T (1.8) BS02 2HP ? N/A Q6Q0L3 N/A
    120 4ind:T (1.8) BS03 2HP ? N/A Q6Q0L3 N/A
    121 4ind:T (1.8) BS04 2HP ? N/A Q6Q0L3 N/A
    122 4tuf:A (2.7) BS01 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    123 4tuf:A (2.7) BS02 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    124 4tuf:A (2.7) BS03 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    125 4tuf:A (2.7) BS04 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    126 4tuf:B (2.7) BS01 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    127 4tuf:B (2.7) BS02 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    128 4tuf:B (2.7) BS03 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    129 4tuf:B (2.7) BS04 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    130 4tuf:B (2.7) BS05 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    131 4tuf:B (2.7) BS06 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    132 4tuf:B (2.7) BS07 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    133 4tuf:B (2.7) BS08 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    134 4tuf:C (2.7) BS01 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    135 4tuf:C (2.7) BS02 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    136 4tuf:C (2.7) BS03 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    137 4tuf:C (2.7) BS04 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    138 4tuf:C (2.7) BS05 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    139 4tuf:C (2.7) BS06 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    140 4tuf:D (2.7) BS01 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    141 4tuf:D (2.7) BS02 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    142 4tuf:D (2.7) BS03 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    143 4tuf:D (2.7) BS04 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    144 4xiw:A (2.6) BS03 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    145 4xiw:A (2.6) BS04 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    146 4xiw:B (2.6) BS03 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    147 4xiw:B (2.6) BS04 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    148 4xiw:C (2.6) BS03 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    149 4xiw:C (2.6) BS04 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    150 4xiw:D (2.6) BS03 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    151 4xiw:E (2.6) BS03 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    152 4xiw:G (2.6) BS03 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    153 4xiw:H (2.6) BS03 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    154 4xix:A (2.7) BS02 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    155 4xix:A (2.7) BS03 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    156 4xix:A (2.7) BS04 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    157 4xix:B (2.7) BS02 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    158 4xix:B (2.7) BS03 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    159 4xix:B (2.7) BS04 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    160 4xix:C (2.7) BS02 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    161 4xix:C (2.7) BS03 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    162 4xix:C (2.7) BS04 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    163 4xix:D (2.7) BS02 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    164 4xix:D (2.7) BS03 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    165 4xix:E (2.7) BS02 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    166 4xix:E (2.7) BS03 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    167 4xix:F (2.7) BS02 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    168 4xix:G (2.7) BS02 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    169 4xix:G (2.7) BS03 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    170 4xix:H (2.7) BS02 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    171 4xix:H (2.7) BS03 2HP 4.2.1.1 GO:0004089 ... Q39588 25617045
    172 5tde:A (1.7) BS02 2HP 2.3.3.8 GO:0046912 ... P53396 28777081
    173 5tde:A (1.7) BS03 2HP 2.3.3.8 GO:0046912 ... P53396 28777081
    174 5tde:B (1.7) BS01 2HP 2.3.3.8 GO:0003824 ... P53396 28777081
    175 5tde:B (1.7) BS02 2HP 2.3.3.8 GO:0003824 ... P53396 28777081
    176 6qfb:A (3.25) BS01 2HP 2.3.3.8 GO:0003824 ... P53396 30944476
    177 6qfb:B (3.25) BS02 2HP 2.3.3.8 GO:0003824 ... P53396 30944476
    178 6qfb:D (3.25) BS01 2HP 2.3.3.8 GO:0003824 ... P53396 30944476
    179 8aih:A (1.9) BS02 2HP 2.7.7.18 GO:0003824 ... A0A133MWI0 37544558
    180 8ghh:A (2.1) BS01 2HP 3.1.4.46 GO:0006629 ... A0A0D6HT57 37236358
    181 8ghi:A (2.4) BS01 2HP 3.1.4.46 GO:0006629 ... A0A0D6HT57 37236358
    182 8k5v:B (1.7) BS06 2HP 3.4.24.35 GO:0004222 ... P14780 37952596
    183 8k5w:B (2.0) BS07 2HP 3.4.24.35 GO:0004222 ... P14780 37952596
    184 8k5x:B (1.9) BS07 2HP 3.4.24.35 GO:0004222 ... P14780 37952596
    185 8k5y:A (1.52) BS07 2HP 3.4.24.35 GO:0004222 ... P14780 37952596
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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