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BioLiP
Download all results in tab-seperated text for 22 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1fdj:A (2.1) BS01 2FP 4.1.2.13 GO:0004332 ... P79226 N/A
    2 1fdj:B (2.1) BS01 2FP 4.1.2.13 GO:0004332 ... P79226 N/A
    3 1umg:A (1.8) BS04 2FP 3.1.3.11
    4.1.2.13    		 GO:0000287 ... F9VMT6 15274916
    4 1zai:A (1.76) BS01 2FP 4.1.2.13 GO:0004332 ... P00883 15870069
    5 1zai:B (1.76) BS01 2FP 4.1.2.13 GO:0004332 ... P00883 15870069
    6 1zai:C (1.76) BS01 2FP 4.1.2.13 GO:0004332 ... P00883 15870069
    7 1zai:D (1.76) BS01 2FP 4.1.2.13 GO:0004332 ... P00883 15870069
    8 2qdg:A (2.2) BS03 2FP 4.1.2.13 GO:0004332 ... Q9U5N6 17661446
    9 2qdg:B (2.2) BS03 2FP 4.1.2.13 GO:0004332 ... Q9U5N6 17661446
    10 2qdg:C (2.2) BS03 2FP 4.1.2.13 GO:0004332 ... Q9U5N6 17661446
    11 2qdg:D (2.2) BS03 2FP 4.1.2.13 GO:0004332 ... Q9U5N6 17661446
    12 3elf:A (1.31) BS01 2FP 4.1.2.13 GO:0004332 ... P9WQA3 19167403
    13 3ll4:A (2.49) BS01 2FP 3.1.3.37 GO:0005634 ... P36136 20427268
    14 3ll4:B (2.49) BS01 2FP 3.1.3.37 GO:0005634 ... P36136 20427268
    15 3mbf:A (2.37) BS01 2FP 4.1.2.13 GO:0004332 ... Q8SSM8 21904050
    16 3mmt:A (2.35) BS01 2FP 4.1.2.13 GO:0004332 ... Q8L207 21904049
    17 3mmt:B (2.35) BS01 2FP 4.1.2.13 GO:0004332 ... Q8L207 21904049
    18 3mmt:C (2.35) BS01 2FP 4.1.2.13 GO:0004332 ... Q8L207 21904049
    19 3mmt:D (2.35) BS01 2FP 4.1.2.13 GO:0004332 ... Q8L207 21904049
    20 4ald:A (2.8) BS01 2FP 4.1.2.13 GO:0003723 ... P04075 10048322
    21 6ald:A (2.3) BS01 2FP 4.1.2.13 GO:0004332 ... P00883 10504235
    22 6ald:B (2.3) BS01 2FP 4.1.2.13 GO:0004332 ... P00883 10504235
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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