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BioLiP
Download all results in tab-seperated text for 31 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1pgq:A (3.17) BS01 2AM 1.1.1.44 GO:0004616 ... P00349 7922042
    2 1rgk:A (1.87) BS01 2AM 4.6.1.24 GO:0001411 ... P00651 1350642 MOAD: Kd=49.1uM
    PDBbind: -logKd/Ki=4.31, Kd=49.1uM
    3 2ydd:A (2.4) BS01 2AM 3.1.4.37 GO:0004113 ... P16330 22393399
    4 2yq9:A (1.9) BS01 2AM 3.1.4.37 GO:0004113 ... P16330 23831225
    5 3ahw:A (1.03) BS01 2AM 4.6.1.20 GO:0003723 ... P00654 20858208
    6 3ocx:A (1.901) BS01 2AM 3.1.3.2 GO:0009279 ... P26093 20934434
    7 4qak:A (2.025) BS01 2AM 3.1.4.58 GO:0004113 ... P37025 N/A
    8 4qak:B (2.025) BS01 2AM 3.1.4.58 GO:0004113 ... P37025 N/A
    9 4wcc:A (2.7) BS01 2AM 3.1.4.37 GO:0004113 ... P16330 26563764
    10 4wda:A (1.85) BS01 2AM 3.1.4.37 GO:0004113 ... P16330 26563764
    11 4wdb:A (1.6) BS01 2AM 3.1.4.37 GO:0004113 ... P16330 26563764
    12 4wfr:A (2.0) BS01 2AM 3.1.4.37 GO:0004113 ... P16330 26563764
    13 4yaf:A (1.91) BS03 2AM 1.6.2.4 GO:0003420 ... P00388 27189945
    14 4yaf:B (1.91) BS03 2AM 1.6.2.4 GO:0003420 ... P00388 27189945
    15 4yal:A (1.88) BS03 2AM 1.6.2.4 GO:0003420 ... P00388 27189945
    16 4yal:B (1.88) BS03 2AM 1.6.2.4 GO:0003420 ... P00388 27189945
    17 4yao:A (2.5) BS03 2AM 1.6.2.4 GO:0003420 ... P00388 27189945
    18 4yao:B (2.5) BS03 2AM 1.6.2.4 GO:0003420 ... P00388 27189945
    19 4yau:A (2.2) BS03 2AM 1.6.2.4 GO:0003420 ... P00388 27189945
    20 4yau:B (2.2) BS03 2AM 1.6.2.4 GO:0003420 ... P00388 27189945
    21 4yaw:A (2.0) BS03 2AM 1.6.2.4 GO:0003420 ... P00388 27189945
    22 4yaw:B (2.0) BS03 2AM 1.6.2.4 GO:0003420 ... P00388 27189945
    23 5dw8:A (2.4) BS02 2AM N/A N/A N/A N/A
    24 5dw8:B (2.4) BS03 2AM N/A N/A N/A N/A
    25 5ldm:A (2.46) BS01 2AM 3.1.4.58 GO:0004113 ... A0A140NFI1 28141848 MOAD: Ka=7210M^-1
    PDBbind: -logKd/Ki=3.86, Kd=139uM
    26 5ldm:B (2.46) BS01 2AM 3.1.4.58 GO:0004113 ... A0A140NFI1 28141848 MOAD: Ka=7210M^-1
    27 5ldm:B (2.46) BS02 2AM 3.1.4.58 GO:0004113 ... A0A140NFI1 28141848 MOAD: Ka=7210M^-1
    28 5uri:A (2.7) BS03 2AM 1.6.2.4 GO:0003420 ... P00388 29308883
    29 5uri:B (2.7) BS03 2AM 1.6.2.4 GO:0003420 ... P00388 29308883
    30 6rnt:A (1.8) BS01 2AM 4.6.1.24 GO:0001411 ... P00651 1651320 MOAD: Kd=4.3mM
    PDBbind: -logKd/Ki=2.37, Kd=4.3mM
    31 7rnt:A (1.9) BS01 2AM 4.6.1.24 GO:0001411 ... P00651 1915364
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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