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BioLiP
Download all results in tab-seperated text for 91 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4ksy:A (1.881) BS01 1SY ? GO:0002218 ... Q86WV6 23747010 MOAD: Kd=3.79nM
    PDBbind: -logKd/Ki=8.42, Kd=3.79nM
    2 4lez:A (2.36) BS06 1SY 2.7.7.86 N/A Q8C6L5 24332030
    3 4lez:C (2.36) BS05 1SY 2.7.7.86 N/A Q8C6L5 24332030
    4 4loh:A (2.25) BS01 1SY ? GO:0002218 ... Q86WV6 23910378 MOAD: Kd=5.3uM
    PDBbind: -logKd/Ki=6.96, Kd=0.11uM
    5 4loh:B (2.25) BS01 1SY ? GO:0002218 ... Q86WV6 23910378 PDBbind: -logKd/Ki=6.96, Kd=0.11uM
    6 4loj:A (1.77) BS01 1SY ? GO:0002218 ... Q3TBT3 23910378 PDBbind: -logKd/Ki=6.52, Kd=0.3uM
    7 4loj:B (1.77) BS01 1SY ? GO:0002218 ... Q3TBT3 23910378 PDBbind: -logKd/Ki=6.52, Kd=0.3uM
    8 4o67:A (2.444) BS01 1SY 2.7.7.86 N/A Q8N884 24462292
    9 4o67:B (2.444) BS01 1SY 2.7.7.86 N/A Q8N884 24462292
    10 5cfq:A (2.099) BS01 1SY ? GO:0002218 ... A7SLZ2 26300263
    11 5cfq:B (2.099) BS01 1SY ? GO:0002218 ... A7SLZ2 26300263 MOAD: Kd<1nM
    12 5grm:A (1.55) BS01 1SY ? GO:0002218 ... F1M391 N/A
    13 5grm:B (1.55) BS01 1SY ? GO:0002218 ... F1M391 N/A MOAD: Kd=0.12uM
    14 5vdp:A (2.3) BS02 1SY 2.7.7.86 N/A Q8N884 28940468 PDBbind: -logKd/Ki=4.05, Kd=89uM
    15 5vdp:B (2.3) BS02 1SY 2.7.7.86 N/A Q8N884 28940468
    16 6a06:A (1.792) BS01 1SY ? GO:0002218 ... B8XX90 31167783
    17 6a06:B (1.792) BS01 1SY ? GO:0002218 ... B8XX90 31167783 MOAD: Kd=3.4nM
    18 6dnk:A (1.95) BS01 1SY ? GO:0002218 ... Q86WV6 31230712
    19 6mjx:A (2.6) BS01 1SY 2.7.7.86 N/A Q8N884 31113940
    20 6nt7:A (4.0) BS01 1SY ? GO:0000045 ... E1C7U0 30842659
    21 6nt7:B (4.0) BS01 1SY ? GO:0000045 ... E1C7U0 30842659
    22 6nt8:A (6.5) BS01 1SY ? GO:0000045 ... E1C7U0 30842659
    23 6nt8:B (6.5) BS01 1SY ? GO:0000045 ... E1C7U0 30842659
    24 6nt8:D (6.5) BS01 1SY ? GO:0000045 ... E1C7U0 30842659
    25 6nt8:E (6.5) BS01 1SY ? GO:0000045 ... E1C7U0 30842659
    26 6wt7:A (2.9) BS01 1SY 3.2.2.6 GO:0000045 ... P0DUE1 32877915
    27 6y99:A (2.984) BS01 1SY ? GO:0002218 ... Q86WV6 33616279
    28 7buq:A (3.091) BS02 1SY 2.7.7.86 GO:0002218 ... Q8C6L5 32814054
    29 7buq:B (3.091) BS02 1SY 2.7.7.86 GO:0002218 ... Q8C6L5 32814054
    30 7ftg:A (1.73) BS01 1SY 2.7.7.86 N/A Q8N884 N/A
    31 7ftg:B (1.73) BS01 1SY 2.7.7.86 N/A Q8N884 N/A
    32 7fth:A (2.55) BS01 1SY 2.7.7.86 N/A Q8N884 N/A
    33 7sii:A (3.45) BS02 1SY ? GO:0000045 ... Q86WV6 35388221
    34 7sii:B (3.45) BS02 1SY ? GO:0000045 ... Q86WV6 35388221
    35 7sii:C (3.45) BS02 1SY ? GO:0000045 ... Q86WV6 35388221
    36 7sii:D (3.45) BS02 1SY ? GO:0000045 ... Q86WV6 35388221
    37 7xq2:A (3.3) BS01 1SY ? GO:0005886 ... P41440 36265513
    38 7xq2:A (3.3) BS02 1SY ? GO:0005886 ... P41440 36265513
    39 8efm:A (2.13) BS01 1SY ? GO:0002218 ... A0A2B4SJD2 37379839
    40 8efm:B (2.13) BS01 1SY ? GO:0002218 ... A0A2B4SJD2 37379839
    41 8flk:A (4.0) BS01 1SY ? GO:0000045 ... Q86WV6 37828400
    42 8flk:B (4.0) BS01 1SY ? GO:0000045 ... Q86WV6 37828400
    43 8flk:C (4.0) BS01 1SY ? GO:0000045 ... Q86WV6 37828400
    44 8flk:D (4.0) BS01 1SY ? GO:0000045 ... Q86WV6 37828400
    45 8flm:A (2.9) BS02 1SY ? GO:0000045 ... Q86WV6 37828400
    46 8flm:B (2.9) BS01 1SY ? GO:0000045 ... Q86WV6 37828400
    47 8flm:C (2.9) BS03 1SY ? GO:0000045 ... Q86WV6 37828400
    48 8flm:D (2.9) BS02 1SY ? GO:0000045 ... Q86WV6 37828400
    49 8ik3:A (3.3) BS01 1SY ? GO:0000045 ... Q86WV6
    Q9HYC4    		 37086726
    50 8ik3:C (3.3) BS01 1SY ? GO:0000045 ... Q86WV6
    Q9HYC4    		 37086726
    51 8ik3:E (3.3) BS01 1SY ? GO:0000045 ... Q86WV6
    Q9HYC4    		 37086726
    52 8ik3:F (3.3) BS01 1SY ? GO:0000045 ... Q86WV6
    Q9HYC4    		 37086726
    53 8ik3:G (3.3) BS01 1SY ? GO:0000045 ... Q86WV6
    Q9HYC4    		 37086726
    54 8ik3:H (3.3) BS01 1SY ? GO:0000045 ... Q86WV6
    Q9HYC4    		 37086726
    55 8j8o:A (2.24) BS01 1SY ? N/A Q6PVL0 38103556
    56 8j8o:B (2.24) BS01 1SY ? N/A Q6PVL0 38103556
    57 8j8o:C (2.24) BS01 1SY ? N/A Q6PVL0 38103556
    58 8j8o:D (2.24) BS01 1SY ? N/A Q6PVL0 38103556
    59 8j8o:E (2.24) BS01 1SY ? N/A Q6PVL0 38103556
    60 8j8o:F (2.24) BS01 1SY ? N/A Q6PVL0 38103556
    61 8kbg:D (2.37) BS01 1SY N/A N/A P0DW58 N/A
    62 8kbg:D (2.37) BS02 1SY N/A N/A P0DW58 N/A
    63 8kbg:E (2.37) BS01 1SY N/A N/A P0DW58 N/A
    64 8kbg:E (2.37) BS02 1SY N/A N/A P0DW58 N/A
    65 8kbg:F (2.37) BS01 1SY N/A N/A P0DW58 N/A
    66 8kbg:F (2.37) BS02 1SY N/A N/A P0DW58 N/A
    67 8kbg:G (2.37) BS01 1SY N/A N/A P0DW58 N/A
    68 8kbg:G (2.37) BS02 1SY N/A N/A P0DW58 N/A
    69 8kbg:H (2.37) BS01 1SY N/A N/A P0DW58 N/A
    70 8kbg:H (2.37) BS02 1SY N/A N/A P0DW58 N/A
    71 8kbg:I (2.37) BS01 1SY N/A N/A P0DW58 N/A
    72 8kbg:I (2.37) BS02 1SY N/A N/A P0DW58 N/A
    73 8kbh:A (1.54) BS02 1SY N/A N/A P0DW58 N/A
    74 8kbh:A (1.54) BS03 1SY N/A N/A P0DW58 N/A
    75 8kbh:B (1.54) BS01 1SY N/A N/A P0DW58 N/A
    76 8kbh:B (1.54) BS02 1SY N/A N/A P0DW58 N/A
    77 8kbh:C (1.54) BS01 1SY N/A N/A P0DW58 N/A
    78 8kbh:D (1.54) BS02 1SY N/A N/A P0DW58 N/A
    79 8kbh:D (1.54) BS03 1SY N/A N/A P0DW58 N/A
    80 8kbh:E (1.54) BS02 1SY N/A N/A P0DW58 N/A
    81 8kbh:E (1.54) BS03 1SY N/A N/A P0DW58 N/A
    82 8kbh:F (1.54) BS02 1SY N/A N/A P0DW58 N/A
    83 8kbh:F (1.54) BS03 1SY N/A N/A P0DW58 N/A
    84 8kbh:G (1.54) BS02 1SY N/A N/A P0DW58 N/A
    85 8kbh:G (1.54) BS03 1SY N/A N/A P0DW58 N/A
    86 8kbh:H (1.54) BS02 1SY N/A N/A P0DW58 N/A
    87 8kbh:H (1.54) BS03 1SY N/A N/A P0DW58 N/A
    88 8kbh:I (1.54) BS02 1SY N/A N/A P0DW58 N/A
    89 8kbh:I (1.54) BS03 1SY N/A N/A P0DW58 N/A
    90 8si0:A (2.7) BS01 1SY 2.7.7.86 N/A Q8N884 38740774
    91 8t5l:B (2.01) BS01 1SY ? GO:0002218 ... Q86WV6 37425806
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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